Detail information of GWHGAAZE002447


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009804151.13.5297E-176PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COGYP_001820212.12E-25galacturan 1,4-alpha-galacturonidase
Swissprottr|Q05967|PGLR_TOBAC3E-170Polygalacturonase (Precursor)
trEMBLtr|A0A058ZUL9|A0A058ZUL9_EUCGR1E-173Uncharacterized protein {ECO:0000313|EMBL:KCW45154.1}
TAIR10AT3G14040.16E-114Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7894097178942171-
GWHAAZE00000001mRNA7894097178942171-
GWHAAZE00000001exon7894186078942171-
GWHAAZE00000001exon7894097178941732-
GWHAAZE00000001CDS7894186078942171-
GWHAAZE00000001CDS7894097178941732-
Transcript Sequence

Network for GWHGAAZE002447

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.18Glyco_hydro_28103382.80E-101
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01213E3.2.1.67 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004650molecular_functionpolygalacturonase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002447.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301000200025050075012501500175022502500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.879
SRR3591706second leaf0.099
SRR3591707mature leaf0.369
SRR3591708Shoot apex1.563
SRR3591709Stem5.271
SRR3591710White floral bud573.621
SRR3591711White flower23.808
SRR3591712Green floral bud1016.688
SRR3591713Yellow flower13.691
SRP173429 SRR8316895Juvenile bud stage 30.782
SRR8316896Juvenile bud stage 252.374
SRR8316897Juvenile bud stage 186.749
SRR8316894Third green stage 135.630
SRR8316900Third green stage 683.649
SRR8316901Third green stage 694.769
SRR8316898Complete white stage 0.446
SRR8316899Complete white stage 6.350
SRR8316903Complete white stage 1.507
SRR8316902Silver flowering stage10.641
SRR8316904Silver flowering stage19.758
SRR8316905Silver flowering stage6.077
SRR8316906Gold flowering stage 3.837
SRR8316907Gold flowering stage 0.942
SRR8316908Gold flowering stage 1.036
SRP132670SRR6706286Control356.221
SRR6706287Light intensity 50%344.735
SRR6706288Light intensity 20%311.527
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1497.198
CNS0095593Slightly white alabastrum(diploid) 2374.453
CNS0095594Slightly white alabastrum(diploid) 3549.720
CNS0095595Whole white alabastrum(diploid) 2924.839
CNS0095596Whole white alabastrum(diploid) 31260.890
CNS0095597Whole white alabastrum(diploid) 4922.993
CNS0095598Silvery flower (diploied) 148.504
CNS0095599Silvery flower (diploied) 2157.650
CNS0095600Silvery flower (diploied) 340.443
CNS0095601Golden flower (diploid) 152.338
CNS0095602Golden flower (diploid) 232.265
CNS0095603Golden flower (diploid) 331.222
CNS0095604Slightly white alabastrum(tetraploid) 11203.503
CNS0095605Slightly white alabastrum(tetraploid) 21263.779
CNS0095606Slightly white alabastrum(tetraploid) 31.405
CNS0095607Whole white alabastrum(tetraploid) 12046.871
CNS0095608Whole white alabastrum(tetraploid) 22247.041
CNS0095609Whole white alabastrum(tetraploid) 31167.322
CNS0095610Silvery flower (tetraploid) 124.964
CNS0095611Silvery flower (tetraploid) 2106.901
CNS0095612Silvery flower (tetraploid) 3237.500
CNS0095613Golden flower (tetraploid) 144.464
CNS0095614Golden flower (tetraploid) 28.800
CNS0095615Golden flower (tetraploid) 3139.343
CRA001975CRR073297Stem 1137.889
CRR073298Stem 2198.153
CRR073299Stem 3111.472
CRR073300Leaf 1573.229
CRR073301Leaf 2481.869
CRR073302Leaf 3386.182
CRR073303Juvenile bud 1545.547
CRR073304Juvenile bud 2567.920
CRR073305Juvenile bud 355.113
CRR073306Third green 1346.420
CRR073307Third green 2506.195
CRR073308Third green 3364.498
CRR073309Second white 134.191
CRR073310Second white 274.626
CRR073311Second white 384.283
CRR073312Silver flowering 1401.348
CRR073313Silver flowering 2435.259
CRR073314Silver flowering 3229.341
CRR073315Gold flowering 1371.324
CRR073316Gold flowering 280.607
CRR073317Gold flowering 3242.000
CRR073318Tawny withering 1325.780
CRR073319Tawny withering 2300.198
CRR073320Tawny withering 3275.210