Gene detail

Detail information of GWHGAAZE002442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804151.1	0	PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COG	YP_003391696.1	5E-23	glycoside hydrolase family 28
Swissprot	tr\|Q05967\|PGLR_TOBAC	0	Polygalacturonase (Precursor)
trEMBL	tr\|A0A061DMV2\|A0A061DMV2_THECC	0	Polygalacturonase {ECO:0000313\|EMBL:EOX93416.1}
TAIR10	AT3G07840.1	3E-114	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78839558	78841301	-
GWHAAZE00000001	mRNA	78839558	78841301	-
GWHAAZE00000001	exon	78839558	78840319	-
GWHAAZE00000001	exon	78840448	78840759	-
GWHAAZE00000001	exon	78841170	78841301	-
GWHAAZE00000001	CDS	78841170	78841301	-
GWHAAZE00000001	CDS	78840448	78840759	-
GWHAAZE00000001	CDS	78839558	78840319	-

Transcript Sequence
>GWHTAAZE002446 ATGGGAACGATGACAACAATTAGCATCAAATTCATTTATTTGTTGTTATTAGTGGGATATGTTGCAGCTCAAGGTGGTGTTTTTGACCTGGTTGCTAAATATGGAGCAAAGCCAGATACAGAAATCAGCCAGGCTCTTTTGACGGCATGGAAAGAGGCATGTGCAGCACCAACACCAAGTACAATTGTGATCCCAAAATGTACATTTGTGTTGAATCAAGTGTCACTTGGAGGTCCTTGCAAGGCTCCTATAACCCTTAGGCTAGAGGCTATCTTAAAGGCACCCGCTGATCCAGCCAAATTAAAGACGGATCTAGAATGGGTCACCTTTAGAAACATTGACCACTTCACAATGATTGGTGGTGGTACCTTTGATGGCCAAGGAAAAACTGCCTGGAGCAACAACGATTGCAAGGCAACCGGAAAATGCAGCAAACTTCCTAATAATCTTAGCTTCAACTTCCTCACGAATGCTGTAATCCAAGAGATAACTTCTCTCGACAGCAAGTTGTTTCATGTTAACGTGCTAGGATGCAAGAACATAAGTTTTGTACGCTTTACTATCACCGCCCCTGGGGACAGCCTTAACACCGATGGAATCCACATCGGACGCTCAACGGGTGTCAAGATCATGGAATCTAATATAAAGACCGGCGATGATTGTGTGTCTATTGGTGATGGCAGCCAACAGGTTACTATCGAGAAAGTAACTTGTGGGCCTGGCCATGGGATTGCTGTGGGGAGCCTTGGCAAGTACCCTCAGGAGGAACCCGTGATTGGAATCTTTGTTAGGAACTGCACCATCACTGGAACAGATAATGGTGTAAGAGTAAAGACGTGGCCTGCTTCTAAACCTGGTGCAGCCTCCGATATTCACTTTGAGAACATTATTATGAATAATGTGAGCAATCCCGTCCTTATTGATCAAGAGTATTGTCCTAGTGGTCAGTGCACAAAGCAGATCCCTTCAAAAGTGAAGATTAGCAAAGTTAGCTTTAAGAACATAAGGGGGACATCAAGGACACAACTTGCTGTGAAAATTGTTTGTAGTCGGGGTATACCATGTGACGGTGTGGAAGTTGCAGATATTGACCTCACGTACAGTGGAAAGGAAGGCCCAGCCACAAGCCAGTGTGCCAACGTTAAGCCAACTTTCATTGGTAAAATGAATCCTCCTGCGTGTGCCGCGCCTGCCCAACCTGCGTAA

Network for GWHGAAZE002442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	54	382	5.00E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.101
	SRR3591706	second leaf	0.058
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.299
	SRR3591709	Stem	1.753
	SRR3591710	White floral bud	81.090
	SRR3591711	White flower	3.135
	SRR3591712	Green floral bud	209.639
	SRR3591713	Yellow flower	0.623
SRP173429	SRR8316895	Juvenile bud stage	0.072
	SRR8316896	Juvenile bud stage	0.468
	SRR8316897	Juvenile bud stage	0.214
	SRR8316894	Third green stage	2.040
	SRR8316900	Third green stage	75.521
	SRR8316901	Third green stage	60.569
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.400
	SRR8316903	Complete white stage	0.170
	SRR8316902	Silver flowering stage	1.927
	SRR8316904	Silver flowering stage	2.973
	SRR8316905	Silver flowering stage	1.011
	SRR8316906	Gold flowering stage	0.807
	SRR8316907	Gold flowering stage	0.134
	SRR8316908	Gold flowering stage	0.209
SRP132670	SRR6706286	Control	44.425
	SRR6706287	Light intensity 50%	45.190
	SRR6706288	Light intensity 20%	48.954
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.118
	CNS0095593	Slightly white alabastrum(diploid) 2	16.266
	CNS0095594	Slightly white alabastrum(diploid) 3	7.311
	CNS0095595	Whole white alabastrum(diploid) 2	161.161
	CNS0095596	Whole white alabastrum(diploid) 3	201.480
	CNS0095597	Whole white alabastrum(diploid) 4	194.796
	CNS0095598	Silvery flower (diploied) 1	4.366
	CNS0095599	Silvery flower (diploied) 2	24.480
	CNS0095600	Silvery flower (diploied) 3	5.904
	CNS0095601	Golden flower (diploid) 1	6.907
	CNS0095602	Golden flower (diploid) 2	4.683
	CNS0095603	Golden flower (diploid) 3	4.875
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.297
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.643
	CNS0095607	Whole white alabastrum(tetraploid) 1	274.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	392.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	163.807
	CNS0095610	Silvery flower (tetraploid) 1	2.652
	CNS0095611	Silvery flower (tetraploid) 2	10.035
	CNS0095612	Silvery flower (tetraploid) 3	30.345
	CNS0095613	Golden flower (tetraploid) 1	3.759
	CNS0095614	Golden flower (tetraploid) 2	0.797
	CNS0095615	Golden flower (tetraploid) 3	17.001
CRA001975	CRR073297	Stem 1	4.418
	CRR073298	Stem 2	4.026
	CRR073299	Stem 3	3.056
	CRR073300	Leaf 1	88.927
	CRR073301	Leaf 2	47.626
	CRR073302	Leaf 3	28.167
	CRR073303	Juvenile bud 1	127.022
	CRR073304	Juvenile bud 2	148.130
	CRR073305	Juvenile bud 3	11.906
	CRR073306	Third green 1	78.571
	CRR073307	Third green 2	107.751
	CRR073308	Third green 3	83.245
	CRR073309	Second white 1	7.763
	CRR073310	Second white 2	13.308
	CRR073311	Second white 3	16.663
	CRR073312	Silver flowering 1	78.854
	CRR073313	Silver flowering 2	85.041
	CRR073314	Silver flowering 3	41.813
	CRR073315	Gold flowering 1	80.435
	CRR073316	Gold flowering 2	15.705
	CRR073317	Gold flowering 3	54.266
	CRR073318	Tawny withering 1	63.496
	CRR073319	Tawny withering 2	57.074
	CRR073320	Tawny withering 3	58.919