Gene detail

Detail information of GWHGAAZE002438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009764608.1	7.7866E-173	PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COG	YP_003391696.1	6E-21	glycoside hydrolase family 28
Swissprot	tr\|P24548\|PGLR_OENOR	5E-162	Exopolygalacturonase (Fragment)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	8E-171	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G07820.1	3E-112	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78706595	78707744	-
GWHAAZE00000001	mRNA	78706595	78707744	-
GWHAAZE00000001	exon	78707439	78707744	-
GWHAAZE00000001	exon	78706595	78707338	-
GWHAAZE00000001	CDS	78707439	78707744	-
GWHAAZE00000001	CDS	78706595	78707338	-

Transcript Sequence
>GWHTAAZE002442 ATGAGTGCTTGGAAAGAGGCATGTGCATCACCGACACCGAGTTCAGTGGTAATTCCAAAAGGCACATTTTTATCCAACGAATTGAAGATTGAGGGTCCCTGCAAAGCTCCTATTGAGTTCCACCTCCAAGCGACATTGAAAGCCCCCGCCGATCCCAGCAAGATGACGGGGGGTTGCGAATGGATCACGTTCCGAAACATCGATCATTTTACCCTGTTGGGTGGTGGAGTCTTTGATGGCCAAGGCAAAACTGCTTGGACACAAAATGATTGCAAAAAAACCGGAAAATGCAGTAAACTTCCAAATAACCTCAGCTTCAACTTCCTCACCAATTCAGTCCTTCGCGATGTAACTAGTCTTGACAGCAAATTGTTTCACGTCAATGTCTTGGGTTGCAAAAATGTGACCTTCCAACATTTTACTGTCACTGCACCCGGAGAAAGCCTCAACACAGATGGGATTCACATTGGCCGTTCAAGTGAAATCACCATCATCGATTCAGTCATAAAGACCGGAGACGATTGTGTGTCCATCGGTGATGGAAGCCGACAAGTGCACATTGAGAAAGTGACTTGTGGTCCGGGCCATGGTATTAGCATTGGAAGTCTTGGAAAGTACCCGAAAGAAGAAGATGTAGTTGGAATCTACGTTAAGAACTGTACTCTCATCAACACTGGAAACGGCGTGAGAGTGAAGACATGGCCCGCTTCCGAGCCTGGCGTTGCCACCGACTTGCACTTTGAGGATATTATAATGGAAAATGTTGGCAACCCTGTCCTTGTTGATCAAGTGTACTGCCCAGATAATCAGTGCAAAGCAGAGATTCCCTCGAATGTTAAGCTTAGCAGAATTAGCTTTAAGAATATAAGGGGTACTTCATCAACTCCGGTTGCGGTGAAACTTGCTTGCAGCAAGAAATTCCAGTGCCAAGGCGTGGAGGTTGCCGACATTAACTTGACGTACAATGGAAAGGAAGGCCCTATCAAAAGCGAGTGTGCCAACGTGAAACCAGTTTTCTCTGGCAAGATGAATCCACCTGCCTGTGCCTAA

Network for GWHGAAZE002438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	8	336	2.70E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.875
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.817
	SRR3591708	Shoot apex	1.681
	SRR3591709	Stem	7.467
	SRR3591710	White floral bud	1274.110
	SRR3591711	White flower	72.547
	SRR3591712	Green floral bud	1551.775
	SRR3591713	Yellow flower	51.330
SRP173429	SRR8316895	Juvenile bud stage	111.212
	SRR8316896	Juvenile bud stage	410.112
	SRR8316897	Juvenile bud stage	203.844
	SRR8316894	Third green stage	163.136
	SRR8316900	Third green stage	748.993
	SRR8316901	Third green stage	767.160
	SRR8316898	Complete white stage	1.092
	SRR8316899	Complete white stage	6.660
	SRR8316903	Complete white stage	1.573
	SRR8316902	Silver flowering stage	13.787
	SRR8316904	Silver flowering stage	27.222
	SRR8316905	Silver flowering stage	7.508
	SRR8316906	Gold flowering stage	4.217
	SRR8316907	Gold flowering stage	1.294
	SRR8316908	Gold flowering stage	2.057
SRP132670	SRR6706286	Control	473.466
	SRR6706287	Light intensity 50%	465.214
	SRR6706288	Light intensity 20%	414.214
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1086.444
	CNS0095593	Slightly white alabastrum(diploid) 2	897.929
	CNS0095594	Slightly white alabastrum(diploid) 3	1416.954
	CNS0095595	Whole white alabastrum(diploid) 2	1925.264
	CNS0095596	Whole white alabastrum(diploid) 3	2310.073
	CNS0095597	Whole white alabastrum(diploid) 4	2663.233
	CNS0095598	Silvery flower (diploied) 1	62.354
	CNS0095599	Silvery flower (diploied) 2	249.504
	CNS0095600	Silvery flower (diploied) 3	60.837
	CNS0095601	Golden flower (diploid) 1	77.542
	CNS0095602	Golden flower (diploid) 2	50.577
	CNS0095603	Golden flower (diploid) 3	49.956
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1901.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2308.591
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.564
	CNS0095607	Whole white alabastrum(tetraploid) 1	3357.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	3649.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	1490.922
	CNS0095610	Silvery flower (tetraploid) 1	33.375
	CNS0095611	Silvery flower (tetraploid) 2	171.927
	CNS0095612	Silvery flower (tetraploid) 3	410.917
	CNS0095613	Golden flower (tetraploid) 1	101.305
	CNS0095614	Golden flower (tetraploid) 2	14.907
	CNS0095615	Golden flower (tetraploid) 3	259.660
CRA001975	CRR073297	Stem 1	349.060
	CRR073298	Stem 2	406.374
	CRR073299	Stem 3	216.301
	CRR073300	Leaf 1	1332.307
	CRR073301	Leaf 2	941.572
	CRR073302	Leaf 3	713.313
	CRR073303	Juvenile bud 1	1174.901
	CRR073304	Juvenile bud 2	1236.095
	CRR073305	Juvenile bud 3	67.618
	CRR073306	Third green 1	513.826
	CRR073307	Third green 2	767.238
	CRR073308	Third green 3	636.487
	CRR073309	Second white 1	26.220
	CRR073310	Second white 2	121.990
	CRR073311	Second white 3	107.278
	CRR073312	Silver flowering 1	476.045
	CRR073313	Silver flowering 2	262.937
	CRR073314	Silver flowering 3	253.240
	CRR073315	Gold flowering 1	1045.682
	CRR073316	Gold flowering 2	247.007
	CRR073317	Gold flowering 3	506.750
	CRR073318	Tawny withering 1	601.098
	CRR073319	Tawny withering 2	526.302
	CRR073320	Tawny withering 3	548.571