Detail information of GWHGAAZE002429


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272020.10PREDICTED: putative BPI/LBP family protein At1g04970 [Vitis vinifera]
Swissprottr|Q9MAU5|Y1049_ARATH5E-166Putative BPI/LBP family protein At1g04970 (Precursor)
trEMBLtr|D7TEG9|D7TEG9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28892.3}
TAIR10AT1G04970.16E-135lipid-binding serum glycoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7854571578550150-
GWHAAZE00000001mRNA7854571578550150-
GWHAAZE00000001exon7854571578545900-
GWHAAZE00000001exon7854638978546514-
GWHAAZE00000001exon7854669478546942-
GWHAAZE00000001exon7854734778547698-
GWHAAZE00000001exon7854798078548148-
GWHAAZE00000001exon7854960478550150-
GWHAAZE00000001five_prime_UTR7854960478550150-
GWHAAZE00000001five_prime_UTR7854814178548148-
GWHAAZE00000001CDS7854798078548140-
GWHAAZE00000001CDS7854734778547698-
GWHAAZE00000001CDS7854669478546942-
GWHAAZE00000001CDS7854638978546514-
GWHAAZE00000001CDS7854571578545900-
Transcript Sequence

Network for GWHGAAZE002429

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01273.26LBP_BPI_CETP8823.30E-12
PF02886.18LBP_BPI_CETP_C1473492.00E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05399LBP NF-kappa B signaling pathway map04064
Toll-like receptor signaling pathwaymap04620

Gene Ontology

GO term OntologyName
GO:0008289molecular_functionlipid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.045
SRR3591706second leaf5.509
SRR3591707mature leaf4.005
SRR3591708Shoot apex7.570
SRR3591709Stem12.810
SRR3591710White floral bud10.511
SRR3591711White flower10.767
SRR3591712Green floral bud16.979
SRR3591713Yellow flower8.489
SRP173429 SRR8316895Juvenile bud stage 8.554
SRR8316896Juvenile bud stage 17.595
SRR8316897Juvenile bud stage 6.523
SRR8316894Third green stage 8.826
SRR8316900Third green stage 16.815
SRR8316901Third green stage 15.196
SRR8316898Complete white stage 3.398
SRR8316899Complete white stage 14.543
SRR8316903Complete white stage 7.153
SRR8316902Silver flowering stage3.769
SRR8316904Silver flowering stage6.937
SRR8316905Silver flowering stage3.221
SRR8316906Gold flowering stage 8.688
SRR8316907Gold flowering stage 7.602
SRR8316908Gold flowering stage 13.106
SRP132670SRR6706286Control10.671
SRR6706287Light intensity 50%9.375
SRR6706288Light intensity 20%9.654
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.364
CNS0095593Slightly white alabastrum(diploid) 27.822
CNS0095594Slightly white alabastrum(diploid) 38.364
CNS0095595Whole white alabastrum(diploid) 29.320
CNS0095596Whole white alabastrum(diploid) 38.059
CNS0095597Whole white alabastrum(diploid) 47.403
CNS0095598Silvery flower (diploied) 14.797
CNS0095599Silvery flower (diploied) 23.201
CNS0095600Silvery flower (diploied) 37.513
CNS0095601Golden flower (diploid) 12.956
CNS0095602Golden flower (diploid) 27.209
CNS0095603Golden flower (diploid) 37.527
CNS0095604Slightly white alabastrum(tetraploid) 114.235
CNS0095605Slightly white alabastrum(tetraploid) 29.631
CNS0095606Slightly white alabastrum(tetraploid) 314.373
CNS0095607Whole white alabastrum(tetraploid) 19.483
CNS0095608Whole white alabastrum(tetraploid) 211.766
CNS0095609Whole white alabastrum(tetraploid) 312.504
CNS0095610Silvery flower (tetraploid) 114.436
CNS0095611Silvery flower (tetraploid) 212.274
CNS0095612Silvery flower (tetraploid) 310.653
CNS0095613Golden flower (tetraploid) 16.219
CNS0095614Golden flower (tetraploid) 211.049
CNS0095615Golden flower (tetraploid) 311.214
CRA001975CRR073297Stem 111.485
CRR073298Stem 211.470
CRR073299Stem 38.957
CRR073300Leaf 112.118
CRR073301Leaf 29.742
CRR073302Leaf 38.156
CRR073303Juvenile bud 19.187
CRR073304Juvenile bud 25.233
CRR073305Juvenile bud 311.486
CRR073306Third green 10.864
CRR073307Third green 21.090
CRR073308Third green 31.702
CRR073309Second white 12.012
CRR073310Second white 21.080
CRR073311Second white 32.431
CRR073312Silver flowering 11.111
CRR073313Silver flowering 21.007
CRR073314Silver flowering 30.630
CRR073315Gold flowering 13.037
CRR073316Gold flowering 24.866
CRR073317Gold flowering 33.636
CRR073318Tawny withering 13.392
CRR073319Tawny withering 24.337
CRR073320Tawny withering 34.694