Detail information of GWHGAAZE002417


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275775.10PREDICTED: zinc finger CCCH domain-containing protein 3 [Vitis vinifera]
Swissprottr|Q94AD9|C3H3_ARATH3E-103Zinc finger CCCH domain-containing protein 3
trEMBLtr|D7TEE8|D7TEE8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28871.3}
TAIR10AT1G04990.24E-79Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7837945078387194+
GWHAAZE00000001mRNA7837945078387194+
GWHAAZE00000001exon7837945078379525+
GWHAAZE00000001exon7838030278380474+
GWHAAZE00000001exon7838066478380801+
GWHAAZE00000001exon7838294878383064+
GWHAAZE00000001exon7838367078383984+
GWHAAZE00000001exon7838569078385917+
GWHAAZE00000001exon7838669078387194+
GWHAAZE00000001CDS7837945078379525+
GWHAAZE00000001CDS7838030278380474+
GWHAAZE00000001CDS7838066478380801+
GWHAAZE00000001CDS7838294878383064+
GWHAAZE00000001CDS7838367078383984+
GWHAAZE00000001CDS7838569078385917+
GWHAAZE00000001CDS7838669078387034+
GWHAAZE00000001three_prime_UTR7838703578387194+
Transcript Sequence

Network for GWHGAAZE002417

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH55799.30E-10
PF00642.25zf-CCCH1251492.70E-09
PF00642.25zf-CCCH1711948.80E-08
PF00642.25zf-CCCH3043293.20E-09
PF00642.25zf-CCCH3503743.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.432
SRR3591706second leaf15.292
SRR3591707mature leaf19.994
SRR3591708Shoot apex19.871
SRR3591709Stem39.231
SRR3591710White floral bud39.898
SRR3591711White flower42.330
SRR3591712Green floral bud49.805
SRR3591713Yellow flower44.669
SRP173429 SRR8316895Juvenile bud stage 23.068
SRR8316896Juvenile bud stage 35.905
SRR8316897Juvenile bud stage 16.855
SRR8316894Third green stage 15.770
SRR8316900Third green stage 54.364
SRR8316901Third green stage 45.596
SRR8316898Complete white stage 15.447
SRR8316899Complete white stage 46.106
SRR8316903Complete white stage 21.765
SRR8316902Silver flowering stage13.341
SRR8316904Silver flowering stage17.582
SRR8316905Silver flowering stage7.880
SRR8316906Gold flowering stage 26.611
SRR8316907Gold flowering stage 32.144
SRR8316908Gold flowering stage 34.165
SRP132670SRR6706286Control41.504
SRR6706287Light intensity 50%38.849
SRR6706288Light intensity 20%39.493
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.393
CNS0095593Slightly white alabastrum(diploid) 228.749
CNS0095594Slightly white alabastrum(diploid) 332.158
CNS0095595Whole white alabastrum(diploid) 228.771
CNS0095596Whole white alabastrum(diploid) 325.215
CNS0095597Whole white alabastrum(diploid) 422.544
CNS0095598Silvery flower (diploied) 122.544
CNS0095599Silvery flower (diploied) 221.171
CNS0095600Silvery flower (diploied) 346.626
CNS0095601Golden flower (diploid) 124.722
CNS0095602Golden flower (diploid) 244.313
CNS0095603Golden flower (diploid) 342.388
CNS0095604Slightly white alabastrum(tetraploid) 127.996
CNS0095605Slightly white alabastrum(tetraploid) 224.885
CNS0095606Slightly white alabastrum(tetraploid) 329.683
CNS0095607Whole white alabastrum(tetraploid) 125.540
CNS0095608Whole white alabastrum(tetraploid) 223.952
CNS0095609Whole white alabastrum(tetraploid) 338.446
CNS0095610Silvery flower (tetraploid) 132.448
CNS0095611Silvery flower (tetraploid) 235.331
CNS0095612Silvery flower (tetraploid) 340.835
CNS0095613Golden flower (tetraploid) 130.034
CNS0095614Golden flower (tetraploid) 241.238
CNS0095615Golden flower (tetraploid) 327.581
CRA001975CRR073297Stem 142.141
CRR073298Stem 243.061
CRR073299Stem 344.857
CRR073300Leaf 143.258
CRR073301Leaf 248.818
CRR073302Leaf 338.731
CRR073303Juvenile bud 141.031
CRR073304Juvenile bud 230.505
CRR073305Juvenile bud 352.214
CRR073306Third green 121.066
CRR073307Third green 218.571
CRR073308Third green 319.663
CRR073309Second white 136.827
CRR073310Second white 236.868
CRR073311Second white 342.187
CRR073312Silver flowering 150.579
CRR073313Silver flowering 256.216
CRR073314Silver flowering 368.763
CRR073315Gold flowering 110.223
CRR073316Gold flowering 215.875
CRR073317Gold flowering 37.632
CRR073318Tawny withering 139.855
CRR073319Tawny withering 237.712
CRR073320Tawny withering 337.953