Detail information of GWHGAAZE002399


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010252513.10PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Nelumbo nucifera]
Swissprottr|Q8RW96|2A5G_ARATH0Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform
trEMBLtr|B9SH46|B9SH46_RICCO0Protein phosphatase 2a, regulatory subunit, putative {ECO:0000313|EMBL:EEF37048.1}
TAIR10AT4G15415.20Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7790673277909421-
GWHAAZE00000001mRNA7790673277909421-
GWHAAZE00000001exon7790673277907058-
GWHAAZE00000001exon7790824377909421-
GWHAAZE00000001CDS7790824377909421-
GWHAAZE00000001CDS7790673277907058-
Transcript Sequence

Network for GWHGAAZE002399

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01603.21B56784893.10E-178
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11584PPP2R5 mRNA surveillance pathway map03015
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Meiosis - yeastmap04113
Oocyte meiosismap04114
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0007165biological_processsignal transduction
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0019888molecular_functionprotein phosphatase regulator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.592
SRR3591706second leaf13.149
SRR3591707mature leaf14.492
SRR3591708Shoot apex26.374
SRR3591709Stem20.839
SRR3591710White floral bud41.895
SRR3591711White flower19.272
SRR3591712Green floral bud35.691
SRR3591713Yellow flower19.806
SRP173429 SRR8316895Juvenile bud stage 8.271
SRR8316896Juvenile bud stage 12.868
SRR8316897Juvenile bud stage 5.775
SRR8316894Third green stage 6.073
SRR8316900Third green stage 19.940
SRR8316901Third green stage 15.500
SRR8316898Complete white stage 6.343
SRR8316899Complete white stage 13.913
SRR8316903Complete white stage 9.347
SRR8316902Silver flowering stage5.097
SRR8316904Silver flowering stage9.316
SRR8316905Silver flowering stage4.068
SRR8316906Gold flowering stage 10.756
SRR8316907Gold flowering stage 8.965
SRR8316908Gold flowering stage 10.543
SRP132670SRR6706286Control10.760
SRR6706287Light intensity 50%12.106
SRR6706288Light intensity 20%11.749
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.181
CNS0095593Slightly white alabastrum(diploid) 213.815
CNS0095594Slightly white alabastrum(diploid) 314.687
CNS0095595Whole white alabastrum(diploid) 222.273
CNS0095596Whole white alabastrum(diploid) 321.267
CNS0095597Whole white alabastrum(diploid) 421.294
CNS0095598Silvery flower (diploied) 17.049
CNS0095599Silvery flower (diploied) 28.124
CNS0095600Silvery flower (diploied) 314.424
CNS0095601Golden flower (diploid) 17.285
CNS0095602Golden flower (diploid) 212.995
CNS0095603Golden flower (diploid) 312.737
CNS0095604Slightly white alabastrum(tetraploid) 131.862
CNS0095605Slightly white alabastrum(tetraploid) 232.858
CNS0095606Slightly white alabastrum(tetraploid) 316.779
CNS0095607Whole white alabastrum(tetraploid) 144.242
CNS0095608Whole white alabastrum(tetraploid) 241.018
CNS0095609Whole white alabastrum(tetraploid) 325.064
CNS0095610Silvery flower (tetraploid) 113.447
CNS0095611Silvery flower (tetraploid) 224.066
CNS0095612Silvery flower (tetraploid) 330.733
CNS0095613Golden flower (tetraploid) 110.561
CNS0095614Golden flower (tetraploid) 215.431
CNS0095615Golden flower (tetraploid) 331.278
CRA001975CRR073297Stem 116.016
CRR073298Stem 215.082
CRR073299Stem 315.164
CRR073300Leaf 121.366
CRR073301Leaf 218.172
CRR073302Leaf 316.302
CRR073303Juvenile bud 116.983
CRR073304Juvenile bud 217.304
CRR073305Juvenile bud 317.189
CRR073306Third green 113.991
CRR073307Third green 29.891
CRR073308Third green 313.190
CRR073309Second white 18.380
CRR073310Second white 28.352
CRR073311Second white 37.302
CRR073312Silver flowering 17.811
CRR073313Silver flowering 27.601
CRR073314Silver flowering 35.465
CRR073315Gold flowering 111.431
CRR073316Gold flowering 216.676
CRR073317Gold flowering 38.470
CRR073318Tawny withering 112.414
CRR073319Tawny withering 212.173
CRR073320Tawny withering 313.357