Gene detail

Detail information of GWHGAAZE002365

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006447587.1	9.6626E-135	hypothetical protein CICLE_v10015460mg [Citrus clementina]
COG	YP_001710557.1	3E-25	serine/threonine-protein kinase
Swissprot	tr\|O22040\|ANP1_ARATH	6E-50	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|V4U4I3\|V4U4I3_9ROSI	4E-135	Uncharacterized protein {ECO:0000313\|EMBL:ESR60827.1}
TAIR10	AT5G55090.1	1E-82	mitogen-activated protein kinase kinase kinase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	76931965	76933200	-
GWHAAZE00000001	mRNA	76931965	76933200	-
GWHAAZE00000001	exon	76931965	76933200	-
GWHAAZE00000001	CDS	76931965	76933200	-

Transcript Sequence
>GWHTAAZE002369 AAATTCCTCTTATTCTTCCCAACTATCCAAAAGACCAAAAGAGGAAGAAATGGGCTGGACCAGGGGCCAAACTATAGGCCGTGGCTCCACCGCCGCGGTCTCCCTTGCCACCACCCCAACGGGGACCTCTTCGCCGTCAAGTCCACAGAGCTTCAAGACTCTGAATTCTTGCAGAAAGAGCAAAATTTTCTTTCCACTTTAACCAATCCCCATCTAGTAGTCTACAAGGGATGTGACATTACTAGAGAAAACAATAAGCTAATGTACAATCTCTTCTTGGAGTACGTGCCAGGTGGCACGCTTAATGATGCAATCCGCAGCCGGGGCGGCCCCCTAGACGATCCGACTGTCCGGCAATACACGTGTCAAATTTTGAAAGGGTTAGAGTACATTCATTCAAATGGCATAGCCCATTGTGACATTAAGGGCCAGAACATTCTAATAGGCCAAAATGGTGCCAAGATCGCTGATTTCGGCTGCGCCAAGTGGACGAATGGGGCGGCACCAGGTGGACTAATCGGCGGTACTCCACTATTTATGGCACCGGAAGTGACACGTGGCGAAAATCAAGGATACCCAGCTGATATATGGGCACTTGGGTGTACAGTCATTGAAATGGCCACCGGCAATTCACCATGGCCTAATGTGAATGACCCATTATCAATTCTTTACACAATTGCATTTTCCGGGAAAATTCCAGAGATCCCTGATTTGCTTTCTAGCCAAGCAAGAGATTTTCTTGGTAAATGTTTAATTCGAGACCCGGAAGAGCGGTGGACGGCAAAAGAGCTTCTAAAACACCCATTTGTTGAGGAATTCAATTGCCAAACAAAGAAATTTGAAGATTTTGATACAAGTTTTTCTCCTACAAGTATTCTTGATCAGGGGATTTGGAACTCTGTTTATGAAACAGAGTCAGTGGTGGGTGTGGGCCAATCAGGGCCGTTGGATTGCCCAGTGCGGCGAATTGGACGGTTGGGATTGGATTCTGGAGTGCCAAGGTGGGGGTTGGATGACGCGGAGAGTTGGATTACAATTAGAAGCAATGATAGAGCAACTCGTGGGTCAGTGACAGATATGGTGGACTCGATTCAATTTTCAGATGAAAATGTTAGTTGCAGTTTTAGTAGTAGTGATTTCTTGATGGGTAGTGTAGAAAGTAGTTTTGTAATTAGTAATGTTAATTTTGATAGGCATGAACAGCTGCTGTTATTGAATAAATCTCAATTTTTATAG

Network for GWHGAAZE002365

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	37	270	2.70E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20716	MAPKKK17_18	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.440
	SRR3591706	second leaf	0.272
	SRR3591707	mature leaf	0.359
	SRR3591708	Shoot apex	0.356
	SRR3591709	Stem	3.608
	SRR3591710	White floral bud	0.304
	SRR3591711	White flower	1.218
	SRR3591712	Green floral bud	0.269
	SRR3591713	Yellow flower	3.952
SRP173429	SRR8316895	Juvenile bud stage	0.381
	SRR8316896	Juvenile bud stage	0.214
	SRR8316897	Juvenile bud stage	0.087
	SRR8316894	Third green stage	0.085
	SRR8316900	Third green stage	0.036
	SRR8316901	Third green stage	0.280
	SRR8316898	Complete white stage	0.050
	SRR8316899	Complete white stage	0.320
	SRR8316903	Complete white stage	0.083
	SRR8316902	Silver flowering stage	0.075
	SRR8316904	Silver flowering stage	0.112
	SRR8316905	Silver flowering stage	0.082
	SRR8316906	Gold flowering stage	0.276
	SRR8316907	Gold flowering stage	1.475
	SRR8316908	Gold flowering stage	2.268
SRP132670	SRR6706286	Control	0.157
	SRR6706287	Light intensity 50%	0.310
	SRR6706288	Light intensity 20%	0.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.083
	CNS0095593	Slightly white alabastrum(diploid) 2	0.337
	CNS0095594	Slightly white alabastrum(diploid) 3	0.337
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.120
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.130
	CNS0095599	Silvery flower (diploied) 2	0.041
	CNS0095600	Silvery flower (diploied) 3	0.135
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.348
	CNS0095603	Golden flower (diploid) 3	0.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.479
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.696
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.332
	CNS0095610	Silvery flower (tetraploid) 1	0.462
	CNS0095611	Silvery flower (tetraploid) 2	0.155
	CNS0095612	Silvery flower (tetraploid) 3	0.479
	CNS0095613	Golden flower (tetraploid) 1	1.664
	CNS0095614	Golden flower (tetraploid) 2	1.892
	CNS0095615	Golden flower (tetraploid) 3	0.716
CRA001975	CRR073297	Stem 1	0.290
	CRR073298	Stem 2	0.116
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.067
	CRR073301	Leaf 2	0.047
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.173
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.380
	CRR073307	Third green 2	0.562
	CRR073308	Third green 3	0.513
	CRR073309	Second white 1	0.003
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.852
	CRR073313	Silver flowering 2	0.790
	CRR073314	Silver flowering 3	0.756
	CRR073315	Gold flowering 1	0.254
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.877
	CRR073319	Tawny withering 2	6.741
	CRR073320	Tawny withering 3	5.065