Gene detail

Detail information of GWHGAAZE002306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281003.2	0	PREDICTED: beta-amylase [Vitis vinifera]
COG	YP_004639880.1	2E-50	beta/alpha-amylase
Swissprot	tr\|P10538\|AMYB_SOYBN	0	Beta-amylase
trEMBL	tr\|A5C2F9\|A5C2F9_VITVI	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}
TAIR10	AT4G15210.1	0	beta-amylase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75407023	75410663	-
GWHAAZE00000001	mRNA	75407023	75410663	-
GWHAAZE00000001	exon	75407023	75407277	-
GWHAAZE00000001	exon	75407360	75407599	-
GWHAAZE00000001	exon	75408559	75408768	-
GWHAAZE00000001	exon	75409229	75409489	-
GWHAAZE00000001	exon	75409770	75409934	-
GWHAAZE00000001	exon	75410280	75410663	-
GWHAAZE00000001	CDS	75410280	75410663	-
GWHAAZE00000001	CDS	75409770	75409934	-
GWHAAZE00000001	CDS	75409229	75409489	-
GWHAAZE00000001	CDS	75408559	75408768	-
GWHAAZE00000001	CDS	75407360	75407599	-
GWHAAZE00000001	CDS	75407023	75407277	-

Transcript Sequence
>GWHTAAZE002310 ATGGACAACGTTGTTGTAGACAAAAACGGACTCGAGAAGCAGCTCAAGGAGCTGTTTGCAGCAGGGGTTGATGGGGTGATGTTAGATGTTTGGTGGGGGATTGTAGAATCCAAAGGCCCAAAGCAATACGATTGGAGTGCTTATAGGACCTTGTTTCAACTTGTTCAACAATGTCGATTGAAATTACAAGTTGTTATGTCGTTCCACCAATGCGGTGGCAACGTGGGTGATGAGGTTTACATACCGCTACCCCAATGGGTACTTGAGGTCGGAGAGAAAGTCCCAGATATCTTCTACACTAATCGGGCTGGTAACAGGAACAACGAGTACCTCTCGATTGGTGTTGATCATATGCCTCTCTTTGGTCAGCGAACAGCGGTGGAGATCTATGCTGACTACATGAAGAGCTTTAGAGAGAACATGGCAGACTTTTTGCAAGCAGAACTCCTAACAGACATTGAAGTGGGTCTTGGCCCAGCAGGCGAGCTTAGATATCCCTCCTATCCACAAAATCAAGGATGGGAGTTTCCGGGAATTGGGGAATTTCAGTGCTATGACAAATTTCTCAAATGGGATTTTAAAGTGGCGGCAACAAAGGCAGGGCACCCCGAATGGGACTTGCCTGATGATGCGGGAGAATATAATGACAAGCCAGAATCAACAAAGTTCTTTGGATCAAAAGGGTATCTTACATATAAAGGGAAATTCTTCTTGACTTGGTATTCGAACAAGTTGCTGATCCATGGTGATGAGATCCTTGATGAAGCCAACAAAGCCTTTCTGGGCTGTAAAGTGAAGTTAGCAGCTAAGGTATCTGGAATTCACTGGTGGTACAAAGACGTTACTCATGCTGCTGAGTTAACTGCGGGATTCTATAATTTGGGCAACAGAGATGGCTATCGGCCCATAGCTAGGATGCTGTCGAGGCATTATGGCATTTTGAATTTCACATGTCTCGAGATGAGGGACACTGAACAACCTGCAGAAGCTAAAAGTGGACCTCAAAAACTTGTTCAGCAGGTCTTCAGCGACGGGTGGATAGAGAAAATCGAAGTTGCTGGTGAAAATGCACTCCCAAGATACGATCGCAAAGCTTATAACCAAATTCTTCTAAATAGTAGGCCAAACGGTGTCAATCAAGATGGCCCACCTAAACTGAAGATGTCGGGCTTTACTTACCTCCGTTTATCGGATGATCTACTAAAGGAGGACAATTTCAGCATATTCAAAACATTTGTGAAGAAATTGCATGCCAATCAGGACTACAGTCCGGATGCAAGCATGGTGGTCACCTTAGAGAGGTCAAAACCAAGGATTCCGATTGAAGAGCTTTTGGAAGCAACTGAACCAATCGAACCGTTCCAATGGAAAGAAGAAAATGAGACGAAAGTTGATGATGGAGAAACAATCATGAATCATGAGTGATGATGAAGAAACAGACACGATCTGAAATCATGACTTTGGGTACTAGTATATATATATATATATATATAAGGAATAATTGAATGTTTCTGA

Network for GWHGAAZE002306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	5	408	5.50E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.468
	SRR3591706	second leaf	1.295
	SRR3591707	mature leaf	0.676
	SRR3591708	Shoot apex	9.261
	SRR3591709	Stem	16.001
	SRR3591710	White floral bud	0.348
	SRR3591711	White flower	0.131
	SRR3591712	Green floral bud	1.430
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	218.443
	SRR8316896	Juvenile bud stage	285.768
	SRR8316897	Juvenile bud stage	142.295
	SRR8316894	Third green stage	28.020
	SRR8316900	Third green stage	1.109
	SRR8316901	Third green stage	6.794
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	0.188
	SRR8316903	Complete white stage	0.068
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	7.670
	SRR6706287	Light intensity 50%	8.527
	SRR6706288	Light intensity 20%	3.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.052
	CNS0095593	Slightly white alabastrum(diploid) 2	1.340
	CNS0095594	Slightly white alabastrum(diploid) 3	57.969
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.159
	CNS0095597	Whole white alabastrum(diploid) 4	0.087
	CNS0095598	Silvery flower (diploied) 1	0.048
	CNS0095599	Silvery flower (diploied) 2	0.242
	CNS0095600	Silvery flower (diploied) 3	0.091
	CNS0095601	Golden flower (diploid) 1	0.743
	CNS0095602	Golden flower (diploid) 2	0.334
	CNS0095603	Golden flower (diploid) 3	0.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.915
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.773
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.153
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.872
	CNS0095610	Silvery flower (tetraploid) 1	0.033
	CNS0095611	Silvery flower (tetraploid) 2	0.737
	CNS0095612	Silvery flower (tetraploid) 3	0.209
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.009
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	352.280
	CRR073298	Stem 2	311.071
	CRR073299	Stem 3	496.580
	CRR073300	Leaf 1	0.201
	CRR073301	Leaf 2	0.619
	CRR073302	Leaf 3	2.780
	CRR073303	Juvenile bud 1	0.065
	CRR073304	Juvenile bud 2	0.087
	CRR073305	Juvenile bud 3	0.088
	CRR073306	Third green 1	0.133
	CRR073307	Third green 2	0.153
	CRR073308	Third green 3	0.111
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	0.080
	CRR073311	Second white 3	0.136
	CRR073312	Silver flowering 1	0.169
	CRR073313	Silver flowering 2	0.195
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.025
	CRR073320	Tawny withering 3	0.077