Gene detail

Detail information of GWHGAAZE002298

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGB14628.1	5.5273E-152	(E)-beta-ocimene synthase [Malus domestica]
Swissprot	tr\|Q6EJ97\|ISPS_PUEML	4E-134	Isoprene synthase, chloroplastic (Precursor)
trEMBL	tr\|L0I762\|L0I762_MALDO	2E-152	(E)-beta-ocimene synthase {ECO:0000313\|EMBL:AGB14628.1}
TAIR10	AT3G25830.1	2E-57	terpene synthase-like sequence-1,8-cineole

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75137326	75140445	+
GWHAAZE00000001	mRNA	75137326	75140445	+
GWHAAZE00000001	exon	75137326	75137614	+
GWHAAZE00000001	exon	75138111	75138480	+
GWHAAZE00000001	exon	75139177	75139315	+
GWHAAZE00000001	exon	75139558	75139806	+
GWHAAZE00000001	exon	75140140	75140445	+
GWHAAZE00000001	CDS	75137326	75137614	+
GWHAAZE00000001	CDS	75138111	75138480	+
GWHAAZE00000001	CDS	75139177	75139315	+
GWHAAZE00000001	CDS	75139558	75139806	+
GWHAAZE00000001	CDS	75140140	75140445	+

Transcript Sequence
>GWHTAAZE002302 GATGAAATAAACGATGAGAGGGCAATTACAAAGAAGCTGTTGGAAGAGGAGGTGAGGGGTATGATTGAGAATGAGGGTGGAAGTCCATTGGAATTGCTTGAACTTATTGATGACATAGAAAAACTAGGGCTTGGGTATTGCTTTGAGAAGGAAATTAGTGAAGCGCTCAATAGATTAGTGTGGACTTCCAAAGCACTTGAGGATATAAATGTTGGAGTAGAGAAGAGTCTCCACGCTACTTCTCTCACATTTAGGCTCCTTAGACAACATGGCTATGAGGTCATTCAAGATGTGTTTAAGAGTTTCAAAGACCATAAATATGGCTTTAAGGAGAGCCTACAAAAGGATGTGAAAGGAATGGTAAGTTTGTATGAAGCTTCATTTCTTGCCTTTGAGGACGAGACCCTATTGGAAGAGGCCAAGTCCTTCACTAGGGCACATCTCAAAAACCAAAGAGGGGTCACAATTAGCCTTGCCAAAGAGGTAAATCATGCCATAGAGATGCCTTTGCACCATAGAATGTCAAGATTGGAGGCTAGGTGGTTTATTGATGCATATAGTGAAAAGGAAAATGCAAATCAATCACTACTTCAACTTGCTATCTTGGATTTCAACGAGGTTCAATCTACACTACAACAAGATCTTCAAGTCGTTTCAAGATGGGATGTGAACGTGGTGAAAGACCTTCCAGATTACATGAAGTTATACTTCCTAGCTCTGTACAACACTGTCAATGAAATGGCTTATGACACTCTCAAACTACAAGGACACAACACCATTCCAATCCTTACAAAAGTTTGGGCGGATCTATGTGAAGCATTCTTGTTGGAAGCAAAGTGGAGCAACAGGAAACACATTCCAACTCTTGAAGATTATCTCGAAAATGCGTGGCGATCAGTCTCGGGAGTTGTCATATTGGTTCATGCATACTTCTTGCTGGAACAACCTATCACAAATGAGGCAATGGAGGGTTTAGAGAGATACCATGACCTTTTAAAGTGGTCATCCATCATTTTCAGGCTTTGCAATGATTTGGGAACTTCATCGGCTGAGCTGGAAAGAGGGAAAACTGCAAATTCAATTGTGTGTTATATGAGAGAAAGTGGGGTTTCAGAGGAACTTGCACGAGAGCATATTAGCAAATTAATTGAAGAAGCATGGAGCAAAATGAACAAGTATTTGGTTTCGGATAATTCTCCTTTCTCAAAAACATTTATTCAAACAGCAATTAACCTTGCTCGGATCTCACATTGCACTTACCAATATGGAGACGGGCATGGAGCTCCGGATACCAGATCCAAGAAACGGATCTTGTCATTGATTATTGAACCCGTAACTATTGTTGGACAGTAG

Network for GWHGAAZE002298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	12	165	1.70E-45
PF03936.17	Terpene_synth_C	216	388	4.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12742	ispS	Biosynthesis of secondary metabolites	map01110
K12742	ispS	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.269
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	4.619
	SRR3591711	White flower	18.530
	SRR3591712	Green floral bud	0.166
	SRR3591713	Yellow flower	7.961
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.067
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.017
	SRR8316900	Third green stage	0.178
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	1.959
	SRR8316899	Complete white stage	0.516
	SRR8316903	Complete white stage	7.803
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.293
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	82.243
	SRR8316907	Gold flowering stage	5.270
	SRR8316908	Gold flowering stage	568.267
SRP132670	SRR6706286	Control	0.058
	SRR6706287	Light intensity 50%	0.339
	SRR6706288	Light intensity 20%	0.027
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.413
	CNS0095593	Slightly white alabastrum(diploid) 2	0.034
	CNS0095594	Slightly white alabastrum(diploid) 3	0.251
	CNS0095595	Whole white alabastrum(diploid) 2	0.033
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	2.891
	CNS0095599	Silvery flower (diploied) 2	1.380
	CNS0095600	Silvery flower (diploied) 3	0.463
	CNS0095601	Golden flower (diploid) 1	3.790
	CNS0095602	Golden flower (diploid) 2	2.548
	CNS0095603	Golden flower (diploid) 3	3.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.315
	CNS0095611	Silvery flower (tetraploid) 2	1.703
	CNS0095612	Silvery flower (tetraploid) 3	2.676
	CNS0095613	Golden flower (tetraploid) 1	0.555
	CNS0095614	Golden flower (tetraploid) 2	1.795
	CNS0095615	Golden flower (tetraploid) 3	0.177
CRA001975	CRR073297	Stem 1	0.108
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.172
	CRR073300	Leaf 1	0.018
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.005
	CRR073304	Juvenile bud 2	0.082
	CRR073305	Juvenile bud 3	0.003
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	1.046
	CRR073310	Second white 2	0.383
	CRR073311	Second white 3	1.453
	CRR073312	Silver flowering 1	1.147
	CRR073313	Silver flowering 2	0.635
	CRR073314	Silver flowering 3	1.308
	CRR073315	Gold flowering 1	1.345
	CRR073316	Gold flowering 2	4.404
	CRR073317	Gold flowering 3	1.611
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.262
	CRR073320	Tawny withering 3	0.000