Gene detail

Detail information of GWHGAAZE002297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010691536.1	3.6473E-160	PREDICTED: 60S ribosomal protein L8-1 [Beta vulgaris subsp. vulgaris]
COG	YP_003669431.1	4E-72	50S ribosomal protein L2
Swissprot	tr\|P29766\|RL8_SOLLC	2E-161	60S ribosomal protein L8
trEMBL	tr\|A0A067KJ21\|A0A067KJ21_JATCU	1E-160	Uncharacterized protein {ECO:0000313\|EMBL:KDP32235.1}
TAIR10	AT4G36130.1	8E-116	Ribosomal protein L2 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75109439	75111758	+
GWHAAZE00000001	mRNA	75109439	75111758	+
GWHAAZE00000001	exon	75109439	75109915	+
GWHAAZE00000001	exon	75111413	75111758	+
GWHAAZE00000001	five_prime_UTR	75109439	75109478	+
GWHAAZE00000001	CDS	75109479	75109915	+
GWHAAZE00000001	CDS	75111413	75111758	+

Transcript Sequence
>GWHTAAZE002301 AAAACCCTAAAAAAAACACAAAAACACACACTTTTTTGAGATGGGTCGGGTCATCCGTGGGCAAAGAAAAGGAGCCGGGTCGGTCTTCAAGTCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGGACCCTTGACTTCGGGGAGCGAAACGGGTACCTCAAGGGCGTGGTGACTGACATCGTGCACGATCCTGGTCGTGGCGCCCCGTTAGCTCAGGTCACGTTCCGCACCCGTTTGCACAAGCACCAAAAGGAGCTTTTCGTGGCAGCGGAGGGGATGTACTCGGGGCAGTATGTGTTTTGTGGGAAGAAGGCTAATTTGGCAGTGGGTAACGTGCTACCTCTCCGGTCGATACCCGAGGGTGCGGTGGTGTGTAACGTGGAGCACAAGATAGGGGATCGCGGAACGCTCGCTAGGGCTTCGGGGGATTATGCTATTGTTATTAGTCATAATCTTGATAATGGTACCACCAGGATCAAGCTTCCGTCCGGAGCCAAGAAAATCGTGCCAAGTGGATGCCGAGCTATGATTGGCCAAGTTGCCGGAGGTGGGAGGACAGAGAAACCGCTCTTGAAGGCTGGAAATGCGTACCACAAGTTCAGGGTAAAGAGGAATTGTTGGCCTAGGGTCCGTGGTGTAGCTATGAACCCAGTGGACCATCCCCATGGTGGTGGCAACCACCAGCACGTTGGCCATGCCACCACTGTACGTGGTGATGCGCCTGCTGGTGCTAAGGTTGGTCAAATCAGGGCCAGGAGAACCGGCCGTCGTACTGGACAAGCCGCGGTAGCAGCCTCGAAATCCGACAAGATTGGTTAA

Network for GWHGAAZE002297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	13	88	2.30E-16
PF03947.19	Ribosomal_L2_C	97	221	4.40E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02938	RP-L8e, RPL8	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.202
	SRR3591711	White flower	0.656
	SRR3591712	Green floral bud	0.101
	SRR3591713	Yellow flower	0.542
SRP173429	SRR8316895	Juvenile bud stage	0.809
	SRR8316896	Juvenile bud stage	1.965
	SRR8316897	Juvenile bud stage	0.155
	SRR8316894	Third green stage	0.273
	SRR8316900	Third green stage	0.166
	SRR8316901	Third green stage	0.276
	SRR8316898	Complete white stage	0.274
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.480
	SRR8316902	Silver flowering stage	0.188
	SRR8316904	Silver flowering stage	0.649
	SRR8316905	Silver flowering stage	0.373
	SRR8316906	Gold flowering stage	2.115
	SRR8316907	Gold flowering stage	1.416
	SRR8316908	Gold flowering stage	3.274
SRP132670	SRR6706286	Control	0.118
	SRR6706287	Light intensity 50%	0.098
	SRR6706288	Light intensity 20%	0.047
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.647
	CNS0095593	Slightly white alabastrum(diploid) 2	0.215
	CNS0095594	Slightly white alabastrum(diploid) 3	1.786
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.270
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.462
	CNS0095599	Silvery flower (diploied) 2	0.897
	CNS0095600	Silvery flower (diploied) 3	0.344
	CNS0095601	Golden flower (diploid) 1	1.798
	CNS0095602	Golden flower (diploid) 2	1.279
	CNS0095603	Golden flower (diploid) 3	1.591
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.510
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.161
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.306
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.328
	CNS0095610	Silvery flower (tetraploid) 1	2.553
	CNS0095611	Silvery flower (tetraploid) 2	2.521
	CNS0095612	Silvery flower (tetraploid) 3	8.176
	CNS0095613	Golden flower (tetraploid) 1	5.020
	CNS0095614	Golden flower (tetraploid) 2	3.438
	CNS0095615	Golden flower (tetraploid) 3	6.555
CRA001975	CRR073297	Stem 1	0.708
	CRR073298	Stem 2	0.729
	CRR073299	Stem 3	1.218
	CRR073300	Leaf 1	0.112
	CRR073301	Leaf 2	0.072
	CRR073302	Leaf 3	0.050
	CRR073303	Juvenile bud 1	0.026
	CRR073304	Juvenile bud 2	0.050
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.153
	CRR073307	Third green 2	0.207
	CRR073308	Third green 3	0.803
	CRR073309	Second white 1	1.431
	CRR073310	Second white 2	1.140
	CRR073311	Second white 3	0.272
	CRR073312	Silver flowering 1	1.629
	CRR073313	Silver flowering 2	5.342
	CRR073314	Silver flowering 3	3.471
	CRR073315	Gold flowering 1	0.542
	CRR073316	Gold flowering 2	1.814
	CRR073317	Gold flowering 3	1.323
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.027
	CRR073320	Tawny withering 3	0.039