Detail information of GWHGAAZE002292


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01944.11.0722E-139unnamed protein product [Coffea canephora]
Swissprottr|Q9SN22|SCL32_ARATH2E-64Scarecrow-like protein 32
trEMBLtr|A0A068U191|A0A068U191_COFCA4E-140Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01944.1}
TAIR10AT3G49950.12E-53GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7505449675055299-
GWHAAZE00000001mRNA7505449675055299-
GWHAAZE00000001exon7505510175055299-
GWHAAZE00000001exon7505449675055070-
GWHAAZE00000001CDS7505510175055299-
GWHAAZE00000001CDS7505449675055070-
Transcript Sequence

Network for GWHGAAZE002292

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS12501.80E-52
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf1.118
SRR3591707mature leaf0.815
SRR3591708Shoot apex1.727
SRR3591709Stem0.000
SRR3591710White floral bud0.192
SRR3591711White flower0.254
SRR3591712Green floral bud0.110
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.367
SRR8316896Juvenile bud stage 0.240
SRR8316897Juvenile bud stage 0.077
SRR8316894Third green stage 0.814
SRR8316900Third green stage 1.559
SRR8316901Third green stage 1.035
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.034
SRR8316903Complete white stage 0.143
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.641
SRR6706287Light intensity 50%1.218
SRR6706288Light intensity 20%1.525
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.360
CNS0095593Slightly white alabastrum(diploid) 20.331
CNS0095594Slightly white alabastrum(diploid) 30.464
CNS0095595Whole white alabastrum(diploid) 20.463
CNS0095596Whole white alabastrum(diploid) 30.134
CNS0095597Whole white alabastrum(diploid) 40.414
CNS0095598Silvery flower (diploied) 10.539
CNS0095599Silvery flower (diploied) 20.488
CNS0095600Silvery flower (diploied) 30.221
CNS0095601Golden flower (diploid) 10.558
CNS0095602Golden flower (diploid) 20.444
CNS0095603Golden flower (diploid) 30.429
CNS0095604Slightly white alabastrum(tetraploid) 10.760
CNS0095605Slightly white alabastrum(tetraploid) 20.058
CNS0095606Slightly white alabastrum(tetraploid) 30.905
CNS0095607Whole white alabastrum(tetraploid) 10.189
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.065
CNS0095611Silvery flower (tetraploid) 20.491
CNS0095612Silvery flower (tetraploid) 30.188
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.847
CRR073298Stem 20.922
CRR073299Stem 30.902
CRR073300Leaf 10.723
CRR073301Leaf 20.447
CRR073302Leaf 30.558
CRR073303Juvenile bud 10.346
CRR073304Juvenile bud 20.024
CRR073305Juvenile bud 31.028
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.263
CRR073316Gold flowering 20.447
CRR073317Gold flowering 30.762
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000