Gene detail

Detail information of GWHGAAZE002290

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGB14628.1	4.4993E-152	(E)-beta-ocimene synthase [Malus domestica]
Swissprot	tr\|Q6EJ97\|ISPS_PUEML	3E-134	Isoprene synthase, chloroplastic (Precursor)
trEMBL	tr\|L0I762\|L0I762_MALDO	2E-152	(E)-beta-ocimene synthase {ECO:0000313\|EMBL:AGB14628.1}
TAIR10	AT3G25830.1	2E-57	terpene synthase-like sequence-1,8-cineole

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74929594	74932722	+
GWHAAZE00000001	mRNA	74929594	74932722	+
GWHAAZE00000001	exon	74929594	74929882	+
GWHAAZE00000001	exon	74930381	74930750	+
GWHAAZE00000001	exon	74931454	74931592	+
GWHAAZE00000001	exon	74931835	74932083	+
GWHAAZE00000001	exon	74932417	74932722	+
GWHAAZE00000001	CDS	74929594	74929882	+
GWHAAZE00000001	CDS	74930381	74930750	+
GWHAAZE00000001	CDS	74931454	74931592	+
GWHAAZE00000001	CDS	74931835	74932083	+
GWHAAZE00000001	CDS	74932417	74932722	+

Transcript Sequence
>GWHTAAZE002294 GATGAAATAAACGAGGAGAGGGCAATTACAAAGAAGCTGTTGGAAGAGGAGGTGAGGGGTATGATTGAGAATGAGGGTGGAAGTCCATTGGAATTGCTTGAACTTATTGATGACATAGAAAAACTAGGGCTTGGGTATTGCTTTGAGAAGGAAATTAGTGAAGCGCTCAATAGATTAGTGTGGACTTCCAAAGCACTTGAGGATATAAATGTTGGAGTAGAGAAGAGTCTCCACGCTACTTCTCTCACATTTAGGCTCCTTAGACAACATGGCTATGAGGTCATTCAAGATGTGTTTAAGAGTTTCAAAGACCATAAATATGGCTTTAAGGAGAGCCTACAAAAGGATGTGAAAGGAATGGTAAGTTTGTATGAAGCTTCATTTCTTGCCTTTGAGGACGAGACCCTATTGGAAGAGGCCAAGTCCTTCACTAGGGCACATCTCAAAAACCAAAGAGGGGTCACAATTAGCCTTGCCAAAGAGGTAAATCATGCCATAGAGATGCCTTTGCACCATAGAATGTCAAGATTGGAGGCTAGGTGGTTTATTGATGCATATAGTGAAAAGGAAAATGCAAATCAATCACTACTTCAACTTGCTATCTTGGATTTCAACGAGGTTCAATCTACACTACAACAAGATCTTCAAGTCGTTTCAAGATGGGATGTGAACGTGGTGAAAGACCTTCCAGATTACATGAAGTTATACTTCCTAGCTCTGTACAACACTGTCAATGAAATGGCTTATGACACTCTCAAACTACAAGGACACAACACCATTCCAATCCTTACAAAAGTTTGGGCGGATCTATGTGAAGCATTCTTGTTGGAAGCAAAGTGGAGCAACAGGAAACACATTCCAACTCTTGAAGATTATCTCGAAAATGCGTGGCGATCGGTCTCGGGAGTTGTCATATTGGTTCATGCATACTTCTTGCTGGAACAACCTATCACAAATGAGGCAATGGAGGGTTTAGAGAGATACCATGACCTTTTAAAATGGTCATCCATCATTTTCAGGCTTTGCAATGATTTGGGAACTTCATCGGCTGAGCTGGAAAGAGGGAAAACTGCAAATTCAATTGTGTGTTATATGAGAGAAAGTGGGGTTTCAGAGGAACTTGCACGAGAGCATATTAGCAAATTAATTGAAGAAGCATGGAGCAAAATGAACAAGTATTTGGTTTCGGATAATTCTCCTTTCTCAAAAACATTTATTCAAACAGCAATTAACCTTGCTCGGATCTCACATTGCACTTACCAATATGGAGACGGGCATGGAGCTCCGGATACCAGATCCAAGAAACGGATCTTGTCATTGATTATTGAACCCGTAACTATTGTTGGACAATAG

Network for GWHGAAZE002290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	11	165	1.70E-45
PF03936.17	Terpene_synth_C	216	388	4.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12742	ispS	Biosynthesis of secondary metabolites	map01110
K12742	ispS	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	2.933
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	9.082
	SRR3591711	White flower	36.608
	SRR3591712	Green floral bud	0.399
	SRR3591713	Yellow flower	12.862
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.054
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.008
	SRR8316900	Third green stage	0.312
	SRR8316901	Third green stage	0.177
	SRR8316898	Complete white stage	1.596
	SRR8316899	Complete white stage	0.198
	SRR8316903	Complete white stage	6.220
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.836
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	136.634
	SRR8316907	Gold flowering stage	13.561
	SRR8316908	Gold flowering stage	974.789
SRP132670	SRR6706286	Control	0.178
	SRR6706287	Light intensity 50%	0.872
	SRR6706288	Light intensity 20%	0.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.396
	CNS0095593	Slightly white alabastrum(diploid) 2	0.322
	CNS0095594	Slightly white alabastrum(diploid) 3	0.081
	CNS0095595	Whole white alabastrum(diploid) 2	0.084
	CNS0095596	Whole white alabastrum(diploid) 3	0.118
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.620
	CNS0095599	Silvery flower (diploied) 2	0.505
	CNS0095600	Silvery flower (diploied) 3	0.135
	CNS0095601	Golden flower (diploid) 1	3.770
	CNS0095602	Golden flower (diploid) 2	1.520
	CNS0095603	Golden flower (diploid) 3	2.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.196
	CNS0095611	Silvery flower (tetraploid) 2	0.789
	CNS0095612	Silvery flower (tetraploid) 3	1.001
	CNS0095613	Golden flower (tetraploid) 1	0.186
	CNS0095614	Golden flower (tetraploid) 2	1.105
	CNS0095615	Golden flower (tetraploid) 3	0.104
CRA001975	CRR073297	Stem 1	0.187
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.060
	CRR073300	Leaf 1	0.067
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.005
	CRR073304	Juvenile bud 2	0.198
	CRR073305	Juvenile bud 3	0.003
	CRR073306	Third green 1	0.110
	CRR073307	Third green 2	0.401
	CRR073308	Third green 3	0.357
	CRR073309	Second white 1	1.923
	CRR073310	Second white 2	0.366
	CRR073311	Second white 3	2.563
	CRR073312	Silver flowering 1	1.747
	CRR073313	Silver flowering 2	1.892
	CRR073314	Silver flowering 3	2.215
	CRR073315	Gold flowering 1	0.310
	CRR073316	Gold flowering 2	1.104
	CRR073317	Gold flowering 3	0.412
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.029
	CRR073320	Tawny withering 3	0.000