Gene detail

Detail information of GWHGAAZE002287

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGB05613.1	2.0493E-123	sesquiterpene synthase 4 [Valeriana officinalis]
Swissprot	tr\|Q6USK1\|GERS_OCIBA	2E-108	Geraniol synthase, chloroplastic (Precursor)
trEMBL	tr\|L0HR59\|L0HR59_VALOF	8E-124	Sesquiterpene synthase 4 {ECO:0000313\|EMBL:AGB05613.1}
TAIR10	AT1G61680.2	3E-43	terpene synthase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74859532	74862331	-
GWHAAZE00000001	mRNA	74859532	74862331	-
GWHAAZE00000001	exon	74859532	74859774	-
GWHAAZE00000001	exon	74860051	74860302	-
GWHAAZE00000001	exon	74860818	74860956	-
GWHAAZE00000001	exon	74862249	74862331	-
GWHAAZE00000001	CDS	74862249	74862331	-
GWHAAZE00000001	CDS	74860818	74860956	-
GWHAAZE00000001	CDS	74860051	74860302	-
GWHAAZE00000001	CDS	74859532	74859774	-

Transcript Sequence
>GWHTAAZE002291 ATGGAACATCAACTTGGCAAACAAGTTCACCAATCTTTGGAGCTTCCAAAGCACTTGAGGATGGCTAGGTTAGAAGCGAGAAGATGGGATCTTAATGCAATGGAAGAGCTTCCAGAGTACATGAAGATATGTTACATGGCGTTGTACAACACCACTAACGAAATTTGTTACAAGATCCTCAAAGAGAACGGATTGAGTGTCCTTCCTTTCCTCAAAACAACGTGGATAGATATGATTGAAGGATTTATGCTTGAAGCCAAATGGTTGAATAGTGGAGAAGTACCAAACCTAGAAGACTACATAGAAAATGGGGTGACCACAGCAGGCTCATATATGGCTTTGGTTCATATATTCTTTCTTATAGGCCAAGGGGTTACTGAAGATAATGTCAAATTACTAATTAACCCCTACCCTAAACTCTTCTCCTCTGCTGGTAGGATCCTTCGGCTGTGGGATGATTTGGGAACTGCCAAGGAGGAACAAGAACGAGGCGACGTCGCATCAAGCATACAATTGTTCATGAAGGAGAAGAGCATAACATGTGAAAATGAAGCAAGAAACCAAATTATTCAAATGGTTCAAGGCTTATGGAAAGAGCTAAATGGAGAGCTAATGGCTCCAAATGCATTGCCATTACCAATTATCAAAGCTTCTTTGAACATGGCAAGAACTTCCCAAGTTGTTTATCAGCATGAAGAAGATAGCTACTTTTCAAGC

Network for GWHGAAZE002287

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.17	Terpene_synth_C	27	199	3.30E-47
PF00614.23	PLDc	330	357	6.20E-10
PF13091.7	PLDc_2	694	738	4.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0006654	biological_process	phosphatidic acid biosynthetic process
GO:0048017	biological_process	inositol lipid-mediated signaling
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0000287	molecular_function	magnesium ion binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.354
	SRR3591706	second leaf	165.465
	SRR3591707	mature leaf	23.550
	SRR3591708	Shoot apex	75.197
	SRR3591709	Stem	2.358
	SRR3591710	White floral bud	0.203
	SRR3591711	White flower	0.668
	SRR3591712	Green floral bud	3.054
	SRR3591713	Yellow flower	0.149
SRP173429	SRR8316895	Juvenile bud stage	1.583
	SRR8316896	Juvenile bud stage	2.418
	SRR8316897	Juvenile bud stage	3.128
	SRR8316894	Third green stage	0.593
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.186
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.172
	SRR6706287	Light intensity 50%	0.029
	SRR6706288	Light intensity 20%	0.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.393
	CNS0095593	Slightly white alabastrum(diploid) 2	1.718
	CNS0095594	Slightly white alabastrum(diploid) 3	3.221
	CNS0095595	Whole white alabastrum(diploid) 2	2.331
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.120
	CNS0095598	Silvery flower (diploied) 1	0.058
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.815
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.309
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.460
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.207
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.702
	CRR073298	Stem 2	1.056
	CRR073299	Stem 3	1.436
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.086
	CRR073304	Juvenile bud 2	0.050
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.386
	CRR073316	Gold flowering 2	6.999
	CRR073317	Gold flowering 3	7.514
	CRR073318	Tawny withering 1	4.510
	CRR073319	Tawny withering 2	1.711
	CRR073320	Tawny withering 3	1.091