Gene detail

Detail information of GWHGAAZE002283

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002533739.1	0	Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
COG	YP_003444757.1	2E-19	alpha-L-glutamate ligase
Swissprot	tr\|Q9LSQ4\|GH36_ARATH	0	Indole-3-acetic acid-amido synthetase GH3.6
trEMBL	tr\|B9T670\|B9T670_RICCO	0	Indole-3-acetic acid-amido synthetase GH3.6, putative {ECO:0000313\|EMBL:EEF28642.1}
TAIR10	AT5G54510.1	0	Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74765439	74768262	+
GWHAAZE00000001	mRNA	74765439	74768262	+
GWHAAZE00000001	exon	74765439	74765731	+
GWHAAZE00000001	exon	74766463	74767391	+
GWHAAZE00000001	exon	74767796	74768262	+
GWHAAZE00000001	CDS	74765439	74765731	+
GWHAAZE00000001	CDS	74766463	74767391	+
GWHAAZE00000001	CDS	74767796	74768262	+

Transcript Sequence
>GWHTAAZE002287 ATGGCCGATAACAATCTCGACAATATAAACAATAAAGCACTTGAATTCATAGAAGATGTTACTAAAAATGCAAAGCAAGTTCAAAAGAGAGTCCTCAATGAAATACTCACTCGTAATGCAAGTGTTGAGTATTTGCAAAGGCATGGCCTCAATGGGTGTACGGACGAAGAAACATTCAAGAAAATGGTGCCAATTGTCACGTATGAAGATTTACGGCCCGATATTGACCGGATTGCTAATGGTGATGCTTCAAATATTCTTTCTTCTCATCCCATTTCAGAATTTTTGACAAGCTCTGGTACATCTGGTGGAGAGAGAAAGCTAATGCCAACAATAGAAGAAGAGCTTGAGAGGAGATCATTGCTTTACAGCCTTCTAATGCCAGTACTAAACCAATTTGTCCCTGGCCTAGAAAAGGGCAAAGGAATGTACTTTTTGTTCACAAAATCAGAAGCCAAAACTCCAGGTGGCCTATTAGCCCGCCCTGTCCTAACAAGCTACTACAAAAGCCCACATTTTAAGGACAGGCCTAACGACCCCTACACCAACTACACTAGCCCAAATGAAACCATTCTTTGCACAGACTCTTACCAAAGCATGTACTCCCAAATGCTCTGTGGGCTCATCCAAAACCATGAGGTCCTACGTGTTGGGGCTGTTTTTGCGTCCGGTTTTATACGCGCGATCCGCTTTCTTGAGAACCACTGGGAGGTTCTTTGTCACGATATAAGGTTTGGTACTTTAAGCGAAGGAATCACTGATGTGTCACTGAGAGAATCAGTCATGAAAATTCTTAGACCAGACCCTGAACTTGCGGATTTTATTGAGGCCGAATGTAGGAGTGGGACATGGAGAGGGATCATAACTAGGTTGTGGCCCAACACCAAGTACATAGATGTTATAGTGACGGGTACAATGGCTCAATATATTCCGACTCTTGATTATTATAGCAATGGGCTACCTTTAGTTTGTACTATGTACGCTTCTTCGGAGTGTTACTTTGGTGTAAACTTAAATCCTTTGTGCAACCCTAGTGAAGTTTGTTATACCTTAATTCCTTGTATGGCATATTTCGAGTTCTTGCCGATGAATAGGGAAAATGGTGGACATTATTTGCGTGTTGAATCGTTGACAATCAATGCTGAGGAGCGTCTAGAATTGGTCAATCTTGTTGATGTTGAACTTGGTCGTGAATACGAGCTTGTGGTCACCACTTATGCAGATGAAGTAGAGCTACAAAATTCAGTCAGAAATGCATCAGACCATCTCATCCCATTCGACGCGTCTCTAGTAGAATACACAAGCTACGCAGACACATCAACTAACCCTGGTCACTACGTCTTATACTGGGAAATTAATTGTAGCAATACAACAAACATTGACCCCTCAGTCTTCGAGACTTGTTGCCTCACAATCGAAGAATCACTCAATAGTGTTTACCGCCAAGGCCGTGTGGCGGATAAGTCAATTGGCCCCCTAGAGATAAAAATAGTGGAAACTGGGACTTTTGACATGCTCATGGACCTTGCTATCAACAATGGTGCATCTATTAACCAGTACAAAGCGCCCCGATGTGTGAAATATGGTCCGATTATCAAGCTTTTGAACTCAAGGGTTGTTTCGAGTTATTTTAGCCCAAAGTGTCCTAATTGGGTGCCAGGTCACAAGCAATGGGTGCACCAACAATAA

Network for GWHGAAZE002283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03321.14	GH3	17	407	2.50E-138
PF03321.14	GH3	408	527	5.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14487	GH3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.497
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.161
	SRR3591708	Shoot apex	0.070
	SRR3591709	Stem	0.356
	SRR3591710	White floral bud	0.028
	SRR3591711	White flower	0.198
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.359
SRP173429	SRR8316895	Juvenile bud stage	0.129
	SRR8316896	Juvenile bud stage	0.097
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.180
	SRR8316901	Third green stage	0.128
	SRR8316898	Complete white stage	0.050
	SRR8316899	Complete white stage	0.114
	SRR8316903	Complete white stage	0.081
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.107
SRP132670	SRR6706286	Control	0.158
	SRR6706287	Light intensity 50%	0.120
	SRR6706288	Light intensity 20%	0.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.002
	CNS0095594	Slightly white alabastrum(diploid) 3	0.263
	CNS0095595	Whole white alabastrum(diploid) 2	0.148
	CNS0095596	Whole white alabastrum(diploid) 3	0.195
	CNS0095597	Whole white alabastrum(diploid) 4	0.153
	CNS0095598	Silvery flower (diploied) 1	0.341
	CNS0095599	Silvery flower (diploied) 2	0.019
	CNS0095600	Silvery flower (diploied) 3	0.049
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.446
	CNS0095603	Golden flower (diploid) 3	0.678
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.136
	CNS0095611	Silvery flower (tetraploid) 2	0.246
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.071
	CNS0095614	Golden flower (tetraploid) 2	1.224
	CNS0095615	Golden flower (tetraploid) 3	0.222
CRA001975	CRR073297	Stem 1	0.002
	CRR073298	Stem 2	0.073
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.250
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.121
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.033
	CRR073316	Gold flowering 2	0.095
	CRR073317	Gold flowering 3	0.033
	CRR073318	Tawny withering 1	1.288
	CRR073319	Tawny withering 2	0.324
	CRR073320	Tawny withering 3	1.645