Gene detail

Detail information of GWHGAAZE002282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007216455.1	3.0979E-175	hypothetical protein PRUPE_ppa023202mg, partial [Prunus persica]
Swissprot	tr\|Q9SXB4\|Y1130_ARATH	2E-122	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor)
trEMBL	tr\|M5WVG0\|M5WVG0_PRUPE	1E-175	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17654.1} (Fragment)
TAIR10	AT1G11300.1	1E-100	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74653764	74656777	-
GWHAAZE00000001	mRNA	74653764	74656777	-
GWHAAZE00000001	exon	74653764	74654060	-
GWHAAZE00000001	exon	74654436	74654517	-
GWHAAZE00000001	exon	74654756	74654916	-
GWHAAZE00000001	exon	74655023	74655130	-
GWHAAZE00000001	exon	74655339	74655421	-
GWHAAZE00000001	exon	74655517	74656777	-
GWHAAZE00000001	CDS	74655517	74656777	-
GWHAAZE00000001	CDS	74655339	74655421	-
GWHAAZE00000001	CDS	74655023	74655130	-
GWHAAZE00000001	CDS	74654756	74654916	-
GWHAAZE00000001	CDS	74654436	74654517	-
GWHAAZE00000001	CDS	74653764	74654060	-

Transcript Sequence
>GWHTAAZE002286 ATGGGTGCATTATGTACACTTATGCTCATCTTATCATTCTCTCTCCTCACTCTTTCCACCGGTGAAGAAAGCGTAACACCGCAAAAGCCACTAATTTCTAACCAAAACATAACTTCAGCAGGTGGAAGCTTTGCATTAGGCTTCTTCAGTCCCGGCAATTCCACAAACACCTATCTCGGCATTTGGTACAATACAATCCCCATACAGACAGTAATATGGGTCGCCAACAGAGACTCTCCGCTCCCCAAGAATTCTCCAGCTGTTCTCACCATAGACCACGATGGAAATCTCGTCATTTTAAACGGCGAAAAAGAACCAATCTGGTCATCAAATGTTCCATCTATTTTATATAAAAACACCACAGTCGGAGTATTACTAGATGATGGAAACCTCGTTCTAAGAGACGGTGGCAACAAACTATGGCAGAGCTTTGACTATCCCACGGATACGTTTCTGCCTGGAATGAAAATAAGCCTCAATAGGGCAACTGGCAAAAATACCAGTTTAGTATCGTGGGCAAATACCAAAAATCCTCGAAATGGAATATTCTCTATGGTAATAGACCCCGAATCGGAAGAGCTACAATTATACCTATGGAAGAACCATGAACCGTACTGGAGAAGCAATGTGTATGCTAATTCTTATTCTCGCACTAAAGGGTATAATAGATCACAAGGGTTTGCCTCCTATGTTACTTACGTGGTGGAAGGTGATGAGGTTTATCTTACATACGGTGTAACAGGTCAATCCACAACTAAATTAAGATTCACATTAATTCCTAGTGGGAAAGCCGAGCTGTTGCAATGGAAGCAGAAGGAATGGGAAGTTCTATGGCAGTTTCCAAAAGCCGAATGCGATTATTATGGCTGCTGTGGTGCCTTTGGTAGCTGCGAGAGAAATGGTTCCCATCCATTATGCGCGTGCTTGAAAGGTTTTGAACCCAAATTTCAGAAAAGTTGGTTTAAAGGAAACTGGACCGATGGGTGTGTGAGAAAAAAGGAATTGAGTTGTGGTAGAGATGATTTTGTGAAACTTCAAAGGATGAAACTACCTGATCACGCAGTCTCGTTGGGGAACATGAATGTTACCGAGTGTAGATTTATGTGCACGAGGAATTGCTCTTGTACGGCTTACGCTTATGCTAATGTGACTGGAGAGATAACAGTGAAATGTTTGAATTGGTTCGGAGATTTGGTGGACCTGGTGCGTAACTCACTCACTGACCAAGATCTCTATCTTAAGCTTCATAGCTCTGAAGTTGATGCAATTAGTACGGGGGACAGTGACAAAGTAACTGCTAAAACTAGAAGTCTGATTGCTGTTTTAGCTGTCAGCATTACCATGACTGATACAGAGCTGTTATCCGTCAGTTTAAGGAGTATATTAGTTGCTACAAACAACTTCTCTGAAGATACCAAACTTGGAGAGGGTGGATTTGGCCCTGTATATAAGGGGTATTTGCAACAAAATCAAGAAGTAGCTATAAAACGGCTATCGAGGAAATCGTTACAAGGACTACAGGAGTTCATGAATGAGTTGAAACTTATTGCCAAACTTCAACATACAAATCTTGTTAGGCTGCTGGGTTGCTGTGTTGAAGAGGATGAAATGATAGACCTAAAAGCAAGCAATGTTCTCTTGGATCAAGCAATGACCCCGAAAATTTCAGACTTTGGAATGGCAAGAGTTTTTGGGGTTTGGGAAAACTGGAAAGAAGGAAGAGTTTCGGAGTCAATTGATCCATCAATAAGAAACACTTGCGAGCTTCACGAGGCGGCAAAGTGCATCAAGGTAGGTCTTCTATGTGTGCAAGAAGCGCCGAGCAATAGACCAACAATGTCTGACGTAGTAGTCATGTTGAGCAATGAAACTGCAGTTGTTCCACAACCCCAAGAACCTGCCTTTTCAACTTGTAGCGGCTCCATATCTACTGCTGAATTTGGTATGCAATCTTATAATGATGTGACAATTAGCACAATAGAGCCTCGATAA

Network for GWHGAAZE002282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	70	172	1.30E-35
PF00954.21	S_locus_glycop	219	316	4.40E-20
PF08276.12	PAN_2	337	401	2.50E-17
PF07714.18	PK_Tyr_Ser-Thr	471	537	9.90E-13
PF00232.19	Glyco_hydro_1	2	202	1.70E-52

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0048544	biological_process	recognition of pollen
GO:0006468	biological_process	protein phosphorylation
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.677
	SRR3591706	second leaf	12.245
	SRR3591707	mature leaf	13.039
	SRR3591708	Shoot apex	10.704
	SRR3591709	Stem	29.115
	SRR3591710	White floral bud	16.830
	SRR3591711	White flower	11.288
	SRR3591712	Green floral bud	9.254
	SRR3591713	Yellow flower	5.916
SRP173429	SRR8316895	Juvenile bud stage	19.911
	SRR8316896	Juvenile bud stage	16.655
	SRR8316897	Juvenile bud stage	5.444
	SRR8316894	Third green stage	3.036
	SRR8316900	Third green stage	4.546
	SRR8316901	Third green stage	6.383
	SRR8316898	Complete white stage	7.102
	SRR8316899	Complete white stage	17.139
	SRR8316903	Complete white stage	13.353
	SRR8316902	Silver flowering stage	5.639
	SRR8316904	Silver flowering stage	11.660
	SRR8316905	Silver flowering stage	4.978
	SRR8316906	Gold flowering stage	17.093
	SRR8316907	Gold flowering stage	10.935
	SRR8316908	Gold flowering stage	12.760
SRP132670	SRR6706286	Control	7.250
	SRR6706287	Light intensity 50%	9.243
	SRR6706288	Light intensity 20%	6.402
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.324
	CNS0095593	Slightly white alabastrum(diploid) 2	8.614
	CNS0095594	Slightly white alabastrum(diploid) 3	12.514
	CNS0095595	Whole white alabastrum(diploid) 2	7.253
	CNS0095596	Whole white alabastrum(diploid) 3	1.926
	CNS0095597	Whole white alabastrum(diploid) 4	10.630
	CNS0095598	Silvery flower (diploied) 1	23.877
	CNS0095599	Silvery flower (diploied) 2	26.399
	CNS0095600	Silvery flower (diploied) 3	10.167
	CNS0095601	Golden flower (diploid) 1	20.099
	CNS0095602	Golden flower (diploid) 2	11.803
	CNS0095603	Golden flower (diploid) 3	11.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.589
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.213
	CNS0095610	Silvery flower (tetraploid) 1	4.514
	CNS0095611	Silvery flower (tetraploid) 2	5.140
	CNS0095612	Silvery flower (tetraploid) 3	7.413
	CNS0095613	Golden flower (tetraploid) 1	1.301
	CNS0095614	Golden flower (tetraploid) 2	1.874
	CNS0095615	Golden flower (tetraploid) 3	0.924
CRA001975	CRR073297	Stem 1	14.798
	CRR073298	Stem 2	13.165
	CRR073299	Stem 3	9.018
	CRR073300	Leaf 1	6.488
	CRR073301	Leaf 2	7.117
	CRR073302	Leaf 3	3.871
	CRR073303	Juvenile bud 1	3.782
	CRR073304	Juvenile bud 2	14.736
	CRR073305	Juvenile bud 3	2.897
	CRR073306	Third green 1	3.182
	CRR073307	Third green 2	1.624
	CRR073308	Third green 3	2.089
	CRR073309	Second white 1	2.464
	CRR073310	Second white 2	1.830
	CRR073311	Second white 3	2.264
	CRR073312	Silver flowering 1	0.536
	CRR073313	Silver flowering 2	0.593
	CRR073314	Silver flowering 3	0.442
	CRR073315	Gold flowering 1	0.718
	CRR073316	Gold flowering 2	2.115
	CRR073317	Gold flowering 3	1.122
	CRR073318	Tawny withering 1	3.375
	CRR073319	Tawny withering 2	22.240
	CRR073320	Tawny withering 3	2.100