Gene detail

Detail information of GWHGAAZE002250

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG00427.1	1.2938E-152	thylakoid formation 1, chloroplastic -like protein [Gossypium arboreum]
Swissprot	tr\|Q9SKT0\|THF1_ARATH	1E-136	Protein THYLAKOID FORMATION 1, chloroplastic (Precursor)
trEMBL	tr\|A0A061E4M4\|A0A061E4M4_THECC	6E-153	Photosystem II reaction center PSB29 protein {ECO:0000313\|EMBL:EOX99296.1}
TAIR10	AT2G20890.1	3E-107	photosystem II reaction center PSB29 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73708305	73714546	+
GWHAAZE00000001	mRNA	73708305	73714546	+
GWHAAZE00000001	exon	73708305	73708506	+
GWHAAZE00000001	exon	73709805	73710151	+
GWHAAZE00000001	exon	73710990	73711012	+
GWHAAZE00000001	exon	73711175	73711391	+
GWHAAZE00000001	exon	73713913	73714028	+
GWHAAZE00000001	exon	73714453	73714546	+
GWHAAZE00000001	CDS	73708305	73708506	+
GWHAAZE00000001	CDS	73709805	73710151	+
GWHAAZE00000001	CDS	73710990	73711012	+
GWHAAZE00000001	CDS	73711175	73711391	+
GWHAAZE00000001	CDS	73713913	73714028	+
GWHAAZE00000001	CDS	73714453	73714546	+

Transcript Sequence
>GWHTAAZE002254 ATGGCGGCGATAACTTCGCTATCTTTTTCGGCATTAGGTCAATCCACTGATAGGAAAGTAGTATCTTCTGCTCAATCAACTACTCGATTCTTCGGTTCCAATTTCGAAGCGTTTCGTCAATCCACTGATAGGTCAAAATTATACACTTCGAATGCGAGTTCCTCCTCTCGCTCGGTCGTTCATTGTATGTCTACTGCTACAGATATACCAACAGTTTCTGAAACAAAATTAAATTTCATCAAGGCCTATAAGCGACCAATACCTAGTATATACAACACCGTCCTGCAAGAGTTAATTGTACAGCAGCATCTAATGAGGTACAAGAAGACATACTGTTACGATGCCGTATTTGCCCTTGGTTTTGTTACTGTGTATGATCAACTAATGGAAGGGTACCCAAGTGACGAGGATCGGAATGCAATCTTCCAGGCATATATTAAGGCACTTCAGGAGGACCCAGAGCAATATAGGCCTGTCTACACCTCCTTGACCTTTTTGTTTAGAATGTTTTCAACTGCTTTCCTTATGAAATTTGACTTTAGTTGGCAAATGGAGATCTGTTGGGCCTCTCTGAACGATGCACAAAAACTAGAAGATTGGGCCGGTGCTCAGACTAGCAGTACATTAGTTGATTTTTCATCAAGAGAGGGGGAAGTTGAAGGCATTTTAAAGGACATTGCAGAAAGAGCTGGGGGTAATGGAAATTTCAGCTACAGTCGATTCTTTGCTATCGGTCTTTTTCGCCTTCTAGAGTTGGCAAATGCGACCGAGCCCAACATTTTAGAGAAGCTTTGTGCAGTGCTGAATATAAATAAAAGAAGTGTGGATAGGGACCTTGATGTTTACCGCAATTTGCTCTCGAAGCTGGTTCAAGCAAAAGAATTATTAAAGGAATATGTGGACAGAGAAAAGAAGAAAGTAGAAGAAAGGGCGGTATCACAAAAGGCTAACGAGGCAGTTGCAAAATGCTCAGCGGCGTACCTATATGCCAGAAACTAA

Network for GWHGAAZE002250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11264.9	ThylakoidFormat	71	163	1.10E-37
PF11264.9	ThylakoidFormat	192	310	1.10E-28
PF01388.22	ARID	53	123	8.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0010207	biological_process	photosystem II assembly
GO:0015979	biological_process	photosynthesis
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.339
	SRR3591706	second leaf	178.436
	SRR3591707	mature leaf	132.392
	SRR3591708	Shoot apex	108.913
	SRR3591709	Stem	46.101
	SRR3591710	White floral bud	40.120
	SRR3591711	White flower	45.481
	SRR3591712	Green floral bud	35.878
	SRR3591713	Yellow flower	36.446
SRP173429	SRR8316895	Juvenile bud stage	56.874
	SRR8316896	Juvenile bud stage	60.706
	SRR8316897	Juvenile bud stage	40.233
	SRR8316894	Third green stage	25.467
	SRR8316900	Third green stage	74.945
	SRR8316901	Third green stage	74.742
	SRR8316898	Complete white stage	22.421
	SRR8316899	Complete white stage	69.026
	SRR8316903	Complete white stage	33.172
	SRR8316902	Silver flowering stage	24.073
	SRR8316904	Silver flowering stage	29.280
	SRR8316905	Silver flowering stage	14.300
	SRR8316906	Gold flowering stage	35.897
	SRR8316907	Gold flowering stage	32.930
	SRR8316908	Gold flowering stage	43.990
SRP132670	SRR6706286	Control	43.242
	SRR6706287	Light intensity 50%	42.503
	SRR6706288	Light intensity 20%	39.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.193
	CNS0095593	Slightly white alabastrum(diploid) 2	34.772
	CNS0095594	Slightly white alabastrum(diploid) 3	38.131
	CNS0095595	Whole white alabastrum(diploid) 2	35.088
	CNS0095596	Whole white alabastrum(diploid) 3	36.026
	CNS0095597	Whole white alabastrum(diploid) 4	29.064
	CNS0095598	Silvery flower (diploied) 1	63.522
	CNS0095599	Silvery flower (diploied) 2	65.279
	CNS0095600	Silvery flower (diploied) 3	42.416
	CNS0095601	Golden flower (diploid) 1	64.948
	CNS0095602	Golden flower (diploid) 2	52.956
	CNS0095603	Golden flower (diploid) 3	54.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.578
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.902
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.756
	CNS0095610	Silvery flower (tetraploid) 1	99.629
	CNS0095611	Silvery flower (tetraploid) 2	81.110
	CNS0095612	Silvery flower (tetraploid) 3	47.611
	CNS0095613	Golden flower (tetraploid) 1	61.287
	CNS0095614	Golden flower (tetraploid) 2	68.838
	CNS0095615	Golden flower (tetraploid) 3	29.923
CRA001975	CRR073297	Stem 1	35.371
	CRR073298	Stem 2	30.641
	CRR073299	Stem 3	27.128
	CRR073300	Leaf 1	19.348
	CRR073301	Leaf 2	19.383
	CRR073302	Leaf 3	12.317
	CRR073303	Juvenile bud 1	14.124
	CRR073304	Juvenile bud 2	17.409
	CRR073305	Juvenile bud 3	17.312
	CRR073306	Third green 1	7.009
	CRR073307	Third green 2	3.903
	CRR073308	Third green 3	5.314
	CRR073309	Second white 1	11.950
	CRR073310	Second white 2	12.579
	CRR073311	Second white 3	9.842
	CRR073312	Silver flowering 1	5.346
	CRR073313	Silver flowering 2	4.848
	CRR073314	Silver flowering 3	8.550
	CRR073315	Gold flowering 1	115.050
	CRR073316	Gold flowering 2	163.125
	CRR073317	Gold flowering 3	72.596
	CRR073318	Tawny withering 1	23.306
	CRR073319	Tawny withering 2	21.856
	CRR073320	Tawny withering 3	20.051