Gene detail

Detail information of GWHGAAZE002243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279448.2	1.1687E-154	PREDICTED: pentatricopeptide repeat-containing protein At1g11900 [Vitis vinifera]
Swissprot	tr\|Q5BIV3\|PPR35_ARATH	4E-86	Pentatricopeptide repeat-containing protein At1g11900
trEMBL	tr\|E0CU43\|E0CU43_VITVI	4E-155	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22109.3}
TAIR10	AT1G11900.1	5E-68	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73587121	73588128	-
GWHAAZE00000001	mRNA	73587121	73588128	-
GWHAAZE00000001	exon	73587121	73588128	-
GWHAAZE00000001	CDS	73587121	73588128	-

Transcript Sequence
>GWHTAAZE002247 TTCTTCGCCATTCTAAGCAATACCATTGGCAATTATCAATCACTAACAACACAAGCCTCTAATTTTGAAGTGGAAGTGGCCGATGAGTTCTTCAATCAAATTCTTTCAGCTATACAAAATTCTCCAAGCTCGAGTAAAGAAATATGTACTACTTATATCGATAAACTCTGCAAAGCCAAAAATCTCAGTGCTGCTGCTAAACTACTACAGTCCTTGCGTAATAAACACATATTTCTTAGCTCTCATGCGTATAATCTCCTTTTAGCAACAGCTGGTGAAGTGAATGACATTAACTTTTCAATGCAAATTTTCAAGGATTTTTTATTATCCTTTGAACGCATAAGTTCAAATTCTTATCTTGTCCTAGCCAAGACACTTGCAAAGTCAAATGATTTTGTTTGGCTACCAGGATTTGTGAGAGAAGTATTGGAATTGACCTTTCCAAGAAGCGTTACAATTATGAACAGAATCATTTTTGCCTTTGCAGAAATTAGACAGGTCGACAAGGCCCTTATGATCTTTGATCATATGAAGAGTCTAAAATGCGAACCTGATTTGATTTCGTATAATACGGTTTTAGGGATCTTGGGTCGGTCCAATCGGGTTGATGAAATGCTCCACGAGTTTGCCTCCATGAAAGAGTCCAACATTAACCCAGATATTATTTCTTATAATACCTTATTAAACAGCTTGCGTAAGGTTGGGAGATTAGATTTATGTATTTTATTTGTGAAAGAAATGGCTGATAGAGGAGTGCAACCGGATTTGCGAACTTACACTGCGTTGATTGAGAGCTTTGGAAAATCAGGAAATGTTGAGGAATCTTTAAGACTATTTGATGAGATGAAGAACAAGCTGATCCGGCCGTCGATTTACATTTACCGATCATTGATAAATAATTTGAAGGACATAGGGAAGTTGGAGTTGGCGATGGCTTTCACTAAGGAGATGAATGCACATCTTCCGGATCTTGTCAGTTCAAAGGATTTCAAAAGGAAAAACAGATAG

Network for GWHGAAZE002243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.21	PPR	155	182	0.057
PF13041.7	PPR_2	184	231	1.10E-09
PF13812.7	PPR_3	244	299	3.20E-11
PF13855.7	LRR_8	7	66	4.10E-07
PF13855.7	LRR_8	137	194	9.60E-08
PF13855.7	LRR_8	281	338	2.00E-08
PF00069.26	Pkinase	368	481	7.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.143
	SRR3591706	second leaf	3.338
	SRR3591707	mature leaf	2.247
	SRR3591708	Shoot apex	4.917
	SRR3591709	Stem	2.038
	SRR3591710	White floral bud	2.319
	SRR3591711	White flower	2.463
	SRR3591712	Green floral bud	1.926
	SRR3591713	Yellow flower	1.505
SRP173429	SRR8316895	Juvenile bud stage	1.509
	SRR8316896	Juvenile bud stage	1.833
	SRR8316897	Juvenile bud stage	0.632
	SRR8316894	Third green stage	0.510
	SRR8316900	Third green stage	1.963
	SRR8316901	Third green stage	1.554
	SRR8316898	Complete white stage	0.671
	SRR8316899	Complete white stage	2.423
	SRR8316903	Complete white stage	1.292
	SRR8316902	Silver flowering stage	0.667
	SRR8316904	Silver flowering stage	0.736
	SRR8316905	Silver flowering stage	0.162
	SRR8316906	Gold flowering stage	0.811
	SRR8316907	Gold flowering stage	1.281
	SRR8316908	Gold flowering stage	1.031
SRP132670	SRR6706286	Control	0.760
	SRR6706287	Light intensity 50%	0.762
	SRR6706288	Light intensity 20%	0.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.409
	CNS0095593	Slightly white alabastrum(diploid) 2	1.163
	CNS0095594	Slightly white alabastrum(diploid) 3	0.549
	CNS0095595	Whole white alabastrum(diploid) 2	0.378
	CNS0095596	Whole white alabastrum(diploid) 3	0.689
	CNS0095597	Whole white alabastrum(diploid) 4	0.938
	CNS0095598	Silvery flower (diploied) 1	2.244
	CNS0095599	Silvery flower (diploied) 2	1.430
	CNS0095600	Silvery flower (diploied) 3	1.558
	CNS0095601	Golden flower (diploid) 1	2.331
	CNS0095602	Golden flower (diploid) 2	1.922
	CNS0095603	Golden flower (diploid) 3	1.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.581
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.644
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.071
	CNS0095610	Silvery flower (tetraploid) 1	0.963
	CNS0095611	Silvery flower (tetraploid) 2	1.458
	CNS0095612	Silvery flower (tetraploid) 3	1.419
	CNS0095613	Golden flower (tetraploid) 1	1.072
	CNS0095614	Golden flower (tetraploid) 2	0.905
	CNS0095615	Golden flower (tetraploid) 3	1.488
CRA001975	CRR073297	Stem 1	0.429
	CRR073298	Stem 2	0.612
	CRR073299	Stem 3	0.292
	CRR073300	Leaf 1	0.614
	CRR073301	Leaf 2	0.327
	CRR073302	Leaf 3	0.130
	CRR073303	Juvenile bud 1	0.138
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.456
	CRR073306	Third green 1	0.062
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.038
	CRR073310	Second white 2	0.162
	CRR073311	Second white 3	0.179
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.099
	CRR073315	Gold flowering 1	0.286
	CRR073316	Gold flowering 2	1.388
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.607
	CRR073319	Tawny withering 2	0.215
	CRR073320	Tawny withering 3	0.356