Detail information of GWHGAAZE002228


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007217251.11.3224E-146hypothetical protein PRUPE_ppa007825mg [Prunus persica]
trEMBLtr|M5XHA7|M5XHA7_PRUPE5E-147Uncharacterized protein {ECO:0000313|EMBL:EMJ18450.1}
TAIR10AT4G03410.23E-115Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7336123073364470-
GWHAAZE00000001mRNA7336123073364470-
GWHAAZE00000001exon7336123073361349-
GWHAAZE00000001exon7336186573362038-
GWHAAZE00000001exon7336273973362852-
GWHAAZE00000001exon7336295773363097-
GWHAAZE00000001exon7336405773364470-
GWHAAZE00000001CDS7336405773364470-
GWHAAZE00000001CDS7336295773363097-
GWHAAZE00000001CDS7336273973362852-
GWHAAZE00000001CDS7336186573362038-
GWHAAZE00000001CDS7336123073361349-
Transcript Sequence

Network for GWHGAAZE002228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04117.13Mpv17_PMP222583195.80E-19
PF01885.17PTS_2-RNA292126.40E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13348MPV17 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
GO:0016021cellular_componentintegral component of membrane
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.451
SRR3591706second leaf29.523
SRR3591707mature leaf105.103
SRR3591708Shoot apex21.685
SRR3591709Stem55.442
SRR3591710White floral bud44.711
SRR3591711White flower79.007
SRR3591712Green floral bud21.704
SRR3591713Yellow flower135.759
SRP173429 SRR8316895Juvenile bud stage 14.247
SRR8316896Juvenile bud stage 23.431
SRR8316897Juvenile bud stage 13.018
SRR8316894Third green stage 12.292
SRR8316900Third green stage 53.732
SRR8316901Third green stage 56.986
SRR8316898Complete white stage 62.066
SRR8316899Complete white stage 97.200
SRR8316903Complete white stage 99.181
SRR8316902Silver flowering stage54.179
SRR8316904Silver flowering stage81.568
SRR8316905Silver flowering stage39.173
SRR8316906Gold flowering stage 141.915
SRR8316907Gold flowering stage 81.751
SRR8316908Gold flowering stage 142.425
SRP132670SRR6706286Control25.024
SRR6706287Light intensity 50%23.211
SRR6706288Light intensity 20%21.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.096
CNS0095593Slightly white alabastrum(diploid) 216.825
CNS0095594Slightly white alabastrum(diploid) 319.063
CNS0095595Whole white alabastrum(diploid) 223.757
CNS0095596Whole white alabastrum(diploid) 322.058
CNS0095597Whole white alabastrum(diploid) 431.642
CNS0095598Silvery flower (diploied) 148.925
CNS0095599Silvery flower (diploied) 264.919
CNS0095600Silvery flower (diploied) 3175.850
CNS0095601Golden flower (diploid) 179.166
CNS0095602Golden flower (diploid) 2159.614
CNS0095603Golden flower (diploid) 3156.885
CNS0095604Slightly white alabastrum(tetraploid) 115.389
CNS0095605Slightly white alabastrum(tetraploid) 212.274
CNS0095606Slightly white alabastrum(tetraploid) 330.191
CNS0095607Whole white alabastrum(tetraploid) 114.680
CNS0095608Whole white alabastrum(tetraploid) 210.809
CNS0095609Whole white alabastrum(tetraploid) 326.744
CNS0095610Silvery flower (tetraploid) 1196.947
CNS0095611Silvery flower (tetraploid) 2150.730
CNS0095612Silvery flower (tetraploid) 350.626
CNS0095613Golden flower (tetraploid) 1140.984
CNS0095614Golden flower (tetraploid) 2183.871
CNS0095615Golden flower (tetraploid) 376.457
CRA001975CRR073297Stem 113.452
CRR073298Stem 215.094
CRR073299Stem 314.688
CRR073300Leaf 127.436
CRR073301Leaf 231.503
CRR073302Leaf 322.186
CRR073303Juvenile bud 141.997
CRR073304Juvenile bud 247.983
CRR073305Juvenile bud 325.876
CRR073306Third green 143.292
CRR073307Third green 232.346
CRR073308Third green 336.628
CRR073309Second white 126.977
CRR073310Second white 235.711
CRR073311Second white 325.870
CRR073312Silver flowering 118.358
CRR073313Silver flowering 219.659
CRR073314Silver flowering 317.343
CRR073315Gold flowering 1116.625
CRR073316Gold flowering 2136.288
CRR073317Gold flowering 357.586
CRR073318Tawny withering 115.253
CRR073319Tawny withering 215.127
CRR073320Tawny withering 312.973