Detail information of GWHGAAZE002223


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272217.32.9609E-141PREDICTED: ELMO domain-containing protein A isoform X2 [Vitis vinifera]
trEMBLtr|A0A067ECB9|A0A067ECB9_CITSI2E-138Uncharacterized protein {ECO:0000313|EMBL:KDO48862.1} (Fragment)
TAIR10AT1G03620.15E-83ELMO/CED-12 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7327681773279561+
GWHAAZE00000001mRNA7327681773279561+
GWHAAZE00000001exon7327681773276919+
GWHAAZE00000001exon7327724173277350+
GWHAAZE00000001exon7327747673277544+
GWHAAZE00000001exon7327765173277766+
GWHAAZE00000001exon7327787773277984+
GWHAAZE00000001exon7327808873278194+
GWHAAZE00000001exon7327870073278747+
GWHAAZE00000001exon7327887973279029+
GWHAAZE00000001exon7327942673279561+
GWHAAZE00000001CDS7327681773276919+
GWHAAZE00000001CDS7327724173277350+
GWHAAZE00000001CDS7327747673277544+
GWHAAZE00000001CDS7327765173277766+
GWHAAZE00000001CDS7327787773277984+
GWHAAZE00000001CDS7327808873278194+
GWHAAZE00000001CDS7327870073278747+
GWHAAZE00000001CDS7327887973279029+
GWHAAZE00000001CDS7327942673279561+
Transcript Sequence

Network for GWHGAAZE002223

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00244.212014/3/321999.90E-68
PF00658.19PABP2152816.80E-18
PF04727.14ELMO_CED12772521.00E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06630YWHAE MAPK signaling pathway - yeast map04011
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
PI3K-Akt signaling pathwaymap04151
Cell cyclemap04110
Oocyte meiosismap04114
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722

Gene Ontology

GO term OntologyName
GO:0019904molecular_functionprotein domain specific binding
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.974
SRR3591706second leaf1.499
SRR3591707mature leaf2.261
SRR3591708Shoot apex2.513
SRR3591709Stem17.583
SRR3591710White floral bud2.939
SRR3591711White flower2.731
SRR3591712Green floral bud6.485
SRR3591713Yellow flower3.039
SRP173429 SRR8316895Juvenile bud stage 3.089
SRR8316896Juvenile bud stage 5.329
SRR8316897Juvenile bud stage 1.744
SRR8316894Third green stage 2.579
SRR8316900Third green stage 7.659
SRR8316901Third green stage 6.244
SRR8316898Complete white stage 0.770
SRR8316899Complete white stage 5.058
SRR8316903Complete white stage 1.540
SRR8316902Silver flowering stage1.053
SRR8316904Silver flowering stage2.355
SRR8316905Silver flowering stage1.138
SRR8316906Gold flowering stage 3.998
SRR8316907Gold flowering stage 4.545
SRR8316908Gold flowering stage 2.183
SRP132670SRR6706286Control4.675
SRR6706287Light intensity 50%4.497
SRR6706288Light intensity 20%4.107
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.608
CNS0095593Slightly white alabastrum(diploid) 23.572
CNS0095594Slightly white alabastrum(diploid) 34.409
CNS0095595Whole white alabastrum(diploid) 25.762
CNS0095596Whole white alabastrum(diploid) 35.982
CNS0095597Whole white alabastrum(diploid) 45.897
CNS0095598Silvery flower (diploied) 12.873
CNS0095599Silvery flower (diploied) 23.030
CNS0095600Silvery flower (diploied) 33.216
CNS0095601Golden flower (diploid) 13.617
CNS0095602Golden flower (diploid) 23.730
CNS0095603Golden flower (diploid) 33.982
CNS0095604Slightly white alabastrum(tetraploid) 14.574
CNS0095605Slightly white alabastrum(tetraploid) 24.332
CNS0095606Slightly white alabastrum(tetraploid) 31.190
CNS0095607Whole white alabastrum(tetraploid) 15.379
CNS0095608Whole white alabastrum(tetraploid) 27.803
CNS0095609Whole white alabastrum(tetraploid) 36.613
CNS0095610Silvery flower (tetraploid) 11.241
CNS0095611Silvery flower (tetraploid) 21.944
CNS0095612Silvery flower (tetraploid) 30.940
CNS0095613Golden flower (tetraploid) 11.014
CNS0095614Golden flower (tetraploid) 21.306
CNS0095615Golden flower (tetraploid) 30.933
CRA001975CRR073297Stem 13.915
CRR073298Stem 23.211
CRR073299Stem 32.412
CRR073300Leaf 15.390
CRR073301Leaf 24.869
CRR073302Leaf 32.037
CRR073303Juvenile bud 12.967
CRR073304Juvenile bud 21.399
CRR073305Juvenile bud 31.743
CRR073306Third green 10.993
CRR073307Third green 20.430
CRR073308Third green 30.675
CRR073309Second white 10.575
CRR073310Second white 21.849
CRR073311Second white 30.648
CRR073312Silver flowering 11.704
CRR073313Silver flowering 20.874
CRR073314Silver flowering 30.707
CRR073315Gold flowering 11.669
CRR073316Gold flowering 21.597
CRR073317Gold flowering 30.873
CRR073318Tawny withering 111.510
CRR073319Tawny withering 212.222
CRR073320Tawny withering 312.008