Gene detail

Detail information of GWHGAAZE002214

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043543.1	0	O-methyltransferase [Theobroma cacao]
COG	YP_007203445.1	3E-46	methylase
Swissprot	tr\|Q6WUC2\|7OMT_PAPSO	8E-139	(R,S)-reticuline 7-O-methyltransferase
trEMBL	tr\|A0A061E2V5\|A0A061E2V5_THECC	0	O-methyltransferase {ECO:0000313\|EMBL:EOX99374.1}
TAIR10	AT5G54160.1	3E-68	O-methyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73026187	73033233	+
GWHAAZE00000001	mRNA	73026187	73033233	+
GWHAAZE00000001	exon	73026187	73026727	+
GWHAAZE00000001	exon	73027139	73027356	+
GWHAAZE00000001	exon	73032934	73033233	+
GWHAAZE00000001	CDS	73026187	73026727	+
GWHAAZE00000001	CDS	73027139	73027356	+
GWHAAZE00000001	CDS	73032934	73033233	+

Transcript Sequence
>GWHTAAZE002218 ATGGAGAAATTTGAAGGAGAAGCTATGCTAAAAGGCCAATCACAGATATGGCAATACATGTTCAATTTCGCCGACTCCATGGCGCTAAGATGCGCCGTGGAGCTCCGTATATCCGACATCATCCACTCCCACGGCCATCCAATCACCTTATCCCAAATTGCCGCGTCCATTGACTCCTCGTCAGAAGTAGATATATCTTGCCTTGCGCGTATATTAAGGGTCTTGGTCCGTAACAAGATCTTCACCGCCACTCTCCCATCGGACAGTGGTGATACGGTCTACGGGCTGACCCCATCGTCCATGTGGCTACTCCATGGAGCCGAGCTGACCCTGGCGCCCATGCTCCTAATGGAAACCCACCAATGGCTGATGTCCCCGTGGCATCAGCTCAGCGCCTGCGTGAAAGAAGGGGGAATTGCGTTTGAAAAGGCCCATGGCAGTGAGATTTGGGACTTTGCATCGAATAACCCGGAGTTCAATCGGATCTTTAATGATGGAATGGGATGTACGGCTAAGATCGTCACCAGAGCCATCATTTCAGGTTACAAGGATGGATTTGATTGCATCGGATCATTGGTCGATGTTGGAGGTGGGATCGGAACAGTAATGATTGAGATTGTTAAAACCTATTCCCATATAAAGGGAATAAATTTTGATCTGCCGCACGTCGTGGCAACAGCGCCAGAGTACGATGGAGTGAGTCATGTGGGTGGTGACATGTTTAAGGCTATTCCTAAGGCTGATGCTGTTTTCATGAAGTGGATTTTGCACGATTGGAACGACGAAGATTGTGTGAAGATCTTAAAAAATTGTCGAAAAGCAATACCAGAAAAAACCGGAAAATTGATTATAGCGGAAGTGGTTCTTCAACCAGACGGAGAAGGCTTATTTGATAACACGGGTTTAGCGTTTGATCTTCTAATGATCGCTCACAGCTCCGGTGGAAAAGAAAGGACTGAACCTGAATGGAAAAAATTACTTGTAGATGGTGGGTTTCCGCGCTACAAAATAATTAAAATTCCATCACTTTTGTCCATCATTGAGGCCTATCCAAATTGA

Network for GWHGAAZE002214

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08100.12	Dimerisation	27	76	4.80E-13
PF00891.19	Methyltransf_2	127	332	8.30E-61
PF03638.16	TCR	340	375	9.70E-12
PF03638.16	TCR	426	462	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0008171	molecular_function	O-methyltransferase activity
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.335
	SRR3591706	second leaf	0.718
	SRR3591707	mature leaf	4.356
	SRR3591708	Shoot apex	0.135
	SRR3591709	Stem	105.611
	SRR3591710	White floral bud	0.455
	SRR3591711	White flower	0.384
	SRR3591712	Green floral bud	4.063
	SRR3591713	Yellow flower	2.053
SRP173429	SRR8316895	Juvenile bud stage	26.294
	SRR8316896	Juvenile bud stage	21.757
	SRR8316897	Juvenile bud stage	2.571
	SRR8316894	Third green stage	2.474
	SRR8316900	Third green stage	7.624
	SRR8316901	Third green stage	7.804
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.128
	SRR8316906	Gold flowering stage	0.095
	SRR8316907	Gold flowering stage	0.066
	SRR8316908	Gold flowering stage	1.272
SRP132670	SRR6706286	Control	2.888
	SRR6706287	Light intensity 50%	2.704
	SRR6706288	Light intensity 20%	2.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.884
	CNS0095593	Slightly white alabastrum(diploid) 2	4.074
	CNS0095594	Slightly white alabastrum(diploid) 3	10.201
	CNS0095595	Whole white alabastrum(diploid) 2	8.488
	CNS0095596	Whole white alabastrum(diploid) 3	9.082
	CNS0095597	Whole white alabastrum(diploid) 4	6.105
	CNS0095598	Silvery flower (diploied) 1	0.186
	CNS0095599	Silvery flower (diploied) 2	0.545
	CNS0095600	Silvery flower (diploied) 3	0.173
	CNS0095601	Golden flower (diploid) 1	0.030
	CNS0095602	Golden flower (diploid) 2	0.259
	CNS0095603	Golden flower (diploid) 3	0.072
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.088
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.415
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.265
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.287
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.104
	CNS0095610	Silvery flower (tetraploid) 1	0.074
	CNS0095611	Silvery flower (tetraploid) 2	0.034
	CNS0095612	Silvery flower (tetraploid) 3	0.668
	CNS0095613	Golden flower (tetraploid) 1	0.975
	CNS0095614	Golden flower (tetraploid) 2	0.654
	CNS0095615	Golden flower (tetraploid) 3	0.677
CRA001975	CRR073297	Stem 1	17.975
	CRR073298	Stem 2	12.872
	CRR073299	Stem 3	31.408
	CRR073300	Leaf 1	3.432
	CRR073301	Leaf 2	2.844
	CRR073302	Leaf 3	2.934
	CRR073303	Juvenile bud 1	1.393
	CRR073304	Juvenile bud 2	1.673
	CRR073305	Juvenile bud 3	0.040
	CRR073306	Third green 1	0.794
	CRR073307	Third green 2	0.285
	CRR073308	Third green 3	0.463
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.139
	CRR073311	Second white 3	0.071
	CRR073312	Silver flowering 1	0.267
	CRR073313	Silver flowering 2	0.219
	CRR073314	Silver flowering 3	0.242
	CRR073315	Gold flowering 1	0.022
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.242
	CRR073318	Tawny withering 1	47.744
	CRR073319	Tawny withering 2	30.330
	CRR073320	Tawny withering 3	40.757