Detail information of GWHGAAZE002200


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003539910.10PREDICTED: lanC-like protein GCL2-like [Glycine max]
COGYP_005034671.10.00000002putative antibiotic modification-related protein
Swissprottr|Q8VZQ6|GCL2_ARATH3E-179LanC-like protein GCL2
trEMBLtr|D7TE45|D7TE45_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28768.3}
TAIR10AT2G20770.16E-145GCR2-like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7267863872684619+
GWHAAZE00000001mRNA7267863872684619+
GWHAAZE00000001exon7267863872678727+
GWHAAZE00000001exon7267925272679430+
GWHAAZE00000001exon7268054072680651+
GWHAAZE00000001exon7268074672680862+
GWHAAZE00000001exon7268168372682000+
GWHAAZE00000001exon7268225272682351+
GWHAAZE00000001exon7268245072682478+
GWHAAZE00000001exon7268428172684619+
GWHAAZE00000001CDS7267863872678727+
GWHAAZE00000001CDS7267925272679430+
GWHAAZE00000001CDS7268054072680651+
GWHAAZE00000001CDS7268074672680862+
GWHAAZE00000001CDS7268168372682000+
GWHAAZE00000001CDS7268225272682351+
GWHAAZE00000001CDS7268245072682478+
GWHAAZE00000001CDS7268428172684619+
Transcript Sequence

Network for GWHGAAZE002200

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05147.14LANC_like444274.10E-89
PF04678.14MCU1683262.40E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20858MCU Calcium signaling pathway map04020
Cellular senescencemap04218
NOD-like receptor signaling pathwaymap04621

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.545
SRR3591706second leaf4.717
SRR3591707mature leaf2.616
SRR3591708Shoot apex12.171
SRR3591709Stem4.275
SRR3591710White floral bud1.938
SRR3591711White flower4.871
SRR3591712Green floral bud6.059
SRR3591713Yellow flower3.680
SRP173429 SRR8316895Juvenile bud stage 6.616
SRR8316896Juvenile bud stage 7.839
SRR8316897Juvenile bud stage 4.446
SRR8316894Third green stage 2.407
SRR8316900Third green stage 8.496
SRR8316901Third green stage 7.691
SRR8316898Complete white stage 0.443
SRR8316899Complete white stage 6.683
SRR8316903Complete white stage 1.050
SRR8316902Silver flowering stage0.867
SRR8316904Silver flowering stage0.900
SRR8316905Silver flowering stage0.400
SRR8316906Gold flowering stage 3.760
SRR8316907Gold flowering stage 2.497
SRR8316908Gold flowering stage 7.026
SRP132670SRR6706286Control8.480
SRR6706287Light intensity 50%7.690
SRR6706288Light intensity 20%9.677
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.898
CNS0095593Slightly white alabastrum(diploid) 27.250
CNS0095594Slightly white alabastrum(diploid) 37.150
CNS0095595Whole white alabastrum(diploid) 26.371
CNS0095596Whole white alabastrum(diploid) 35.738
CNS0095597Whole white alabastrum(diploid) 46.366
CNS0095598Silvery flower (diploied) 17.420
CNS0095599Silvery flower (diploied) 27.883
CNS0095600Silvery flower (diploied) 32.739
CNS0095601Golden flower (diploid) 17.850
CNS0095602Golden flower (diploid) 24.947
CNS0095603Golden flower (diploid) 34.802
CNS0095604Slightly white alabastrum(tetraploid) 17.144
CNS0095605Slightly white alabastrum(tetraploid) 27.571
CNS0095606Slightly white alabastrum(tetraploid) 312.542
CNS0095607Whole white alabastrum(tetraploid) 13.393
CNS0095608Whole white alabastrum(tetraploid) 23.313
CNS0095609Whole white alabastrum(tetraploid) 37.863
CNS0095610Silvery flower (tetraploid) 12.028
CNS0095611Silvery flower (tetraploid) 22.663
CNS0095612Silvery flower (tetraploid) 31.913
CNS0095613Golden flower (tetraploid) 10.780
CNS0095614Golden flower (tetraploid) 21.627
CNS0095615Golden flower (tetraploid) 30.494
CRA001975CRR073297Stem 111.411
CRR073298Stem 212.852
CRR073299Stem 313.121
CRR073300Leaf 19.976
CRR073301Leaf 28.808
CRR073302Leaf 310.080
CRR073303Juvenile bud 19.366
CRR073304Juvenile bud 23.645
CRR073305Juvenile bud 37.221
CRR073306Third green 10.158
CRR073307Third green 20.512
CRR073308Third green 30.325
CRR073309Second white 10.425
CRR073310Second white 20.857
CRR073311Second white 30.462
CRR073312Silver flowering 10.823
CRR073313Silver flowering 21.695
CRR073314Silver flowering 31.478
CRR073315Gold flowering 15.257
CRR073316Gold flowering 29.122
CRR073317Gold flowering 36.176
CRR073318Tawny withering 17.428
CRR073319Tawny withering 25.837
CRR073320Tawny withering 35.514