Detail information of GWHGAAZE002186


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043582.15.31199E-91RING membrane-anchor 1, putative isoform 1 [Theobroma cacao]
Swissprottr|Q6R567|RMA1_CAPAN4E-88E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|A0A061EAU9|A0A061EAU9_THECC2E-91RING membrane-anchor 1, putative isoform 1 {ECO:0000313|EMBL:EOX99413.1}
TAIR10AT4G27470.18E-38RING membrane-anchor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7239812672398893+
GWHAAZE00000001mRNA7239812672398893+
GWHAAZE00000001exon7239812672398757+
GWHAAZE00000001exon7239879472398893+
GWHAAZE00000001CDS7239812672398757+
GWHAAZE00000001CDS7239879472398893+
Transcript Sequence

Network for GWHGAAZE002186

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC446941.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.098
SRR3591706second leaf23.724
SRR3591707mature leaf75.964
SRR3591708Shoot apex48.668
SRR3591709Stem155.828
SRR3591710White floral bud99.239
SRR3591711White flower210.802
SRR3591712Green floral bud32.734
SRR3591713Yellow flower265.098
SRP173429 SRR8316895Juvenile bud stage 22.278
SRR8316896Juvenile bud stage 27.530
SRR8316897Juvenile bud stage 6.706
SRR8316894Third green stage 16.251
SRR8316900Third green stage 58.897
SRR8316901Third green stage 58.268
SRR8316898Complete white stage 55.039
SRR8316899Complete white stage 133.507
SRR8316903Complete white stage 99.287
SRR8316902Silver flowering stage114.526
SRR8316904Silver flowering stage136.548
SRR8316905Silver flowering stage60.848
SRR8316906Gold flowering stage 235.744
SRR8316907Gold flowering stage 212.291
SRR8316908Gold flowering stage 205.954
SRP132670SRR6706286Control112.667
SRR6706287Light intensity 50%98.618
SRR6706288Light intensity 20%100.118
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.649
CNS0095593Slightly white alabastrum(diploid) 254.711
CNS0095594Slightly white alabastrum(diploid) 334.064
CNS0095595Whole white alabastrum(diploid) 246.076
CNS0095596Whole white alabastrum(diploid) 343.562
CNS0095597Whole white alabastrum(diploid) 450.055
CNS0095598Silvery flower (diploied) 1154.240
CNS0095599Silvery flower (diploied) 2117.490
CNS0095600Silvery flower (diploied) 3259.580
CNS0095601Golden flower (diploid) 1136.841
CNS0095602Golden flower (diploid) 2305.645
CNS0095603Golden flower (diploid) 3292.225
CNS0095604Slightly white alabastrum(tetraploid) 135.554
CNS0095605Slightly white alabastrum(tetraploid) 233.573
CNS0095606Slightly white alabastrum(tetraploid) 356.667
CNS0095607Whole white alabastrum(tetraploid) 133.538
CNS0095608Whole white alabastrum(tetraploid) 231.872
CNS0095609Whole white alabastrum(tetraploid) 328.226
CNS0095610Silvery flower (tetraploid) 1219.672
CNS0095611Silvery flower (tetraploid) 2217.513
CNS0095612Silvery flower (tetraploid) 3193.209
CNS0095613Golden flower (tetraploid) 1279.911
CNS0095614Golden flower (tetraploid) 2231.804
CNS0095615Golden flower (tetraploid) 3276.579
CRA001975CRR073297Stem 153.984
CRR073298Stem 243.772
CRR073299Stem 350.763
CRR073300Leaf 163.221
CRR073301Leaf 284.465
CRR073302Leaf 350.891
CRR073303Juvenile bud 184.423
CRR073304Juvenile bud 250.221
CRR073305Juvenile bud 3128.302
CRR073306Third green 1165.680
CRR073307Third green 2191.697
CRR073308Third green 3172.379
CRR073309Second white 1155.222
CRR073310Second white 2123.340
CRR073311Second white 3100.027
CRR073312Silver flowering 1164.851
CRR073313Silver flowering 2193.191
CRR073314Silver flowering 3177.801
CRR073315Gold flowering 1179.649
CRR073316Gold flowering 2199.275
CRR073317Gold flowering 3140.572
CRR073318Tawny withering 1197.949
CRR073319Tawny withering 2126.509
CRR073320Tawny withering 3187.371