Detail information of GWHGAAZE002182


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010272471.13.7862E-104PREDICTED: riboflavin synthase-like [Nelumbo nucifera]
COGYP_001275328.11E-63riboflavin synthase subunit alpha
trEMBLtr|F6H5B6|F6H5B6_VITVI4E-104Putative uncharacterized protein {ECO:0000313|EMBL:CCB47277.1}
TAIR10AT2G20690.14E-72lumazine-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7226959272270149+
GWHAAZE00000001mRNA7226959272270149+
GWHAAZE00000001exon7226959272270149+
GWHAAZE00000001CDS7226959272270149+
Transcript Sequence

Network for GWHGAAZE002182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00677.18Lum_binding11651.80E-17
PF00677.18Lum_binding781642.40E-21
PF01588.21tRNA_bind2042981.30E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00793ribE, RIB5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740

Gene Ontology

GO term OntologyName
GO:0000049molecular_functiontRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.189
SRR3591706second leaf46.967
SRR3591707mature leaf40.828
SRR3591708Shoot apex56.880
SRR3591709Stem40.415
SRR3591710White floral bud36.443
SRR3591711White flower55.878
SRR3591712Green floral bud60.266
SRR3591713Yellow flower65.777
SRP173429 SRR8316895Juvenile bud stage 34.152
SRR8316896Juvenile bud stage 47.763
SRR8316897Juvenile bud stage 31.333
SRR8316894Third green stage 14.015
SRR8316900Third green stage 52.391
SRR8316901Third green stage 54.141
SRR8316898Complete white stage 19.662
SRR8316899Complete white stage 46.607
SRR8316903Complete white stage 24.991
SRR8316902Silver flowering stage33.829
SRR8316904Silver flowering stage44.468
SRR8316905Silver flowering stage26.666
SRR8316906Gold flowering stage 75.208
SRR8316907Gold flowering stage 73.596
SRR8316908Gold flowering stage 75.679
SRP132670SRR6706286Control55.125
SRR6706287Light intensity 50%57.690
SRR6706288Light intensity 20%65.114
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.787
CNS0095593Slightly white alabastrum(diploid) 244.363
CNS0095594Slightly white alabastrum(diploid) 344.042
CNS0095595Whole white alabastrum(diploid) 243.630
CNS0095596Whole white alabastrum(diploid) 338.812
CNS0095597Whole white alabastrum(diploid) 439.032
CNS0095598Silvery flower (diploied) 141.861
CNS0095599Silvery flower (diploied) 250.978
CNS0095600Silvery flower (diploied) 344.446
CNS0095601Golden flower (diploid) 134.593
CNS0095602Golden flower (diploid) 248.783
CNS0095603Golden flower (diploid) 350.710
CNS0095604Slightly white alabastrum(tetraploid) 147.755
CNS0095605Slightly white alabastrum(tetraploid) 238.115
CNS0095606Slightly white alabastrum(tetraploid) 369.645
CNS0095607Whole white alabastrum(tetraploid) 123.540
CNS0095608Whole white alabastrum(tetraploid) 224.978
CNS0095609Whole white alabastrum(tetraploid) 367.094
CNS0095610Silvery flower (tetraploid) 168.251
CNS0095611Silvery flower (tetraploid) 250.950
CNS0095612Silvery flower (tetraploid) 358.414
CNS0095613Golden flower (tetraploid) 172.360
CNS0095614Golden flower (tetraploid) 268.181
CNS0095615Golden flower (tetraploid) 349.321
CRA001975CRR073297Stem 131.830
CRR073298Stem 238.311
CRR073299Stem 352.671
CRR073300Leaf 146.391
CRR073301Leaf 240.069
CRR073302Leaf 354.579
CRR073303Juvenile bud 158.862
CRR073304Juvenile bud 266.365
CRR073305Juvenile bud 349.828
CRR073306Third green 1112.169
CRR073307Third green 299.302
CRR073308Third green 398.355
CRR073309Second white 1102.715
CRR073310Second white 281.048
CRR073311Second white 367.656
CRR073312Silver flowering 1106.022
CRR073313Silver flowering 296.359
CRR073314Silver flowering 372.034
CRR073315Gold flowering 161.436
CRR073316Gold flowering 271.242
CRR073317Gold flowering 363.682
CRR073318Tawny withering 127.207
CRR073319Tawny withering 232.112
CRR073320Tawny withering 329.780