Detail information of GWHGAAZE002180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010097906.10Callose synthase 12 [Morus notabilis]
Swissprottr|Q9ZT82|CALSC_ARATH0Callose synthase 12
trEMBLtr|W9RUC1|W9RUC1_9ROSA0Callose synthase 12 {ECO:0000313|EMBL:EXB72969.1}
TAIR10AT4G03550.10glucan synthase-like 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7222508272228324-
GWHAAZE00000001mRNA7222508272228324-
GWHAAZE00000001exon7222743172228324-
GWHAAZE00000001exon7222508272227391-
GWHAAZE00000001CDS7222743172228324-
GWHAAZE00000001CDS7222508272227391-
Transcript Sequence

Network for GWHGAAZE002180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02364.16Glucan_synthase5516394.80E-31
PF02364.16Glucan_synthase64510454.10E-165
PF00847.21AP241923.20E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0006075biological_process(1->3)-beta-D-glucan biosynthetic process
GO:0000148cellular_component1,3-beta-D-glucan synthase complex
GO:0016020cellular_componentmembrane
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding
GO:0003843molecular_function1,3-beta-D-glucan synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.778
SRR3591706second leaf5.618
SRR3591707mature leaf3.033
SRR3591708Shoot apex16.929
SRR3591709Stem18.523
SRR3591710White floral bud10.399
SRR3591711White flower13.148
SRR3591712Green floral bud10.875
SRR3591713Yellow flower9.953
SRP173429 SRR8316895Juvenile bud stage 9.961
SRR8316896Juvenile bud stage 12.663
SRR8316897Juvenile bud stage 6.356
SRR8316894Third green stage 4.354
SRR8316900Third green stage 9.614
SRR8316901Third green stage 9.015
SRR8316898Complete white stage 2.115
SRR8316899Complete white stage 6.682
SRR8316903Complete white stage 6.256
SRR8316902Silver flowering stage3.236
SRR8316904Silver flowering stage8.166
SRR8316905Silver flowering stage3.219
SRR8316906Gold flowering stage 11.134
SRR8316907Gold flowering stage 11.483
SRR8316908Gold flowering stage 15.447
SRP132670SRR6706286Control8.928
SRR6706287Light intensity 50%9.839
SRR6706288Light intensity 20%10.052
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.639
CNS0095593Slightly white alabastrum(diploid) 23.416
CNS0095594Slightly white alabastrum(diploid) 33.351
CNS0095595Whole white alabastrum(diploid) 25.788
CNS0095596Whole white alabastrum(diploid) 33.840
CNS0095597Whole white alabastrum(diploid) 44.012
CNS0095598Silvery flower (diploied) 18.524
CNS0095599Silvery flower (diploied) 27.178
CNS0095600Silvery flower (diploied) 313.723
CNS0095601Golden flower (diploid) 15.856
CNS0095602Golden flower (diploid) 218.747
CNS0095603Golden flower (diploid) 318.095
CNS0095604Slightly white alabastrum(tetraploid) 18.089
CNS0095605Slightly white alabastrum(tetraploid) 25.276
CNS0095606Slightly white alabastrum(tetraploid) 315.835
CNS0095607Whole white alabastrum(tetraploid) 16.276
CNS0095608Whole white alabastrum(tetraploid) 26.205
CNS0095609Whole white alabastrum(tetraploid) 310.571
CNS0095610Silvery flower (tetraploid) 18.894
CNS0095611Silvery flower (tetraploid) 27.178
CNS0095612Silvery flower (tetraploid) 312.854
CNS0095613Golden flower (tetraploid) 14.904
CNS0095614Golden flower (tetraploid) 27.790
CNS0095615Golden flower (tetraploid) 312.720
CRA001975CRR073297Stem 113.711
CRR073298Stem 211.875
CRR073299Stem 312.044
CRR073300Leaf 19.929
CRR073301Leaf 29.246
CRR073302Leaf 38.155
CRR073303Juvenile bud 15.283
CRR073304Juvenile bud 25.766
CRR073305Juvenile bud 38.392
CRR073306Third green 19.520
CRR073307Third green 24.829
CRR073308Third green 39.247
CRR073309Second white 111.441
CRR073310Second white 212.374
CRR073311Second white 321.099
CRR073312Silver flowering 126.866
CRR073313Silver flowering 224.002
CRR073314Silver flowering 318.174
CRR073315Gold flowering 17.595
CRR073316Gold flowering 213.897
CRR073317Gold flowering 313.400
CRR073318Tawny withering 116.709
CRR073319Tawny withering 211.552
CRR073320Tawny withering 315.560