Gene detail

Detail information of GWHGAAZE002175

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009802541.1	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Nicotiana sylvestris]
COG	YP_003371239.1	3E-23	serine/threonine protein kinase
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|M1BKC2\|M1BKC2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047232}
TAIR10	AT1G53050.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72071461	72078388	-
GWHAAZE00000001	mRNA	72071461	72078388	-
GWHAAZE00000001	exon	72071461	72071673	-
GWHAAZE00000001	exon	72072499	72072972	-
GWHAAZE00000001	exon	72073568	72073683	-
GWHAAZE00000001	exon	72073983	72074097	-
GWHAAZE00000001	exon	72074561	72074788	-
GWHAAZE00000001	exon	72075715	72076032	-
GWHAAZE00000001	exon	72077145	72077429	-
GWHAAZE00000001	exon	72077978	72078388	-
GWHAAZE00000001	CDS	72077978	72078388	-
GWHAAZE00000001	CDS	72077145	72077429	-
GWHAAZE00000001	CDS	72075715	72076032	-
GWHAAZE00000001	CDS	72074561	72074788	-
GWHAAZE00000001	CDS	72073983	72074097	-
GWHAAZE00000001	CDS	72073568	72073683	-
GWHAAZE00000001	CDS	72072499	72072972	-
GWHAAZE00000001	CDS	72071461	72071673	-

Transcript Sequence
>GWHTAAZE002179 ATGGGTTGCATTCATGGTAAATCGGCTATCGAAGATAGTCGGGAGAGTCTGAGCGATAGACAATCGAATAAAGGATCGGGGTTACGCATTCCTCGAGGGACTTCTTCGAGAAGAGAGAGTTCGAGGAGAGAGAGTTTTCGGGTGAAGGATAAGAAAGGTGGAGGTGATGTAAGACCTGGATTGATTGATAAGAAAGTGAGTGGTTCAAGGCGAGTGCGAGATGATCATTTTGAAAAGAAAAGGGATAATTTTGAAGTTCTTGCTGATTATCCAGGTAGTGGGAGTGTTCCGAAAGCTATGGAAGGAGAACAAGTTGCGGCTGGTTGGCCTTCTTGGCTTGCTGCAGTGGCTGGTGAAGCTATCAATGAATGGGTACCAAGGCGAGCAGAAAGTTTTGAGAAATTAGATAAGATTGGCCAAGGAACTTATAGTAGCGTATACAAGGCTCGCGACCTCATTCATAACAAAGTTGTTGCATTAAAAAGAGTGCGATTTGATAATATGGACCTTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTATTTTGCGTAGGCTCGATCATCCGAATATAATTAAACTGGAAGGGTTGGTCACATCTCGGACGTCTTGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGACCTTACTGGGCTTGCGTCACTCCCTGGTGTGAAGTTCACGGAACCACAGGTTAAATGTTACATGGAACAGCTGCTAAATGGACTGGATCATTGTCATAGTCGCGGTGTTTTGCATCGTGACATAAAGGGTTCAAATCTCTTGATTGACAATCACGGGATCTTGAAAATCGCGGACTTTGGTTTAGCAAGTTTTTACAATCAGAATCAGAGTGTGCCATTGACAAGTCGTGTTGTGACTCTTTGGTATCGACCACCAGAACTTTTACTTGGAGCCACGCATTATGGAATTGCAGTGGATTTATGGAGTGCTGGTTGCATTCTTGGAGAACTATATGCTGGAAAGCCAATCATGCCTGGTAGAACAGAGGTTGAGCAATTGCATAAAATTTTCAAGCTTTGTGGCTCACCCTCTGAGGATTATTGGAAAAAATCAAAGCTACCCCATTCAACGGTGTTTAAACCTATACAACCTTACAGAAGACGTCTTGCAGAAACATTTAAAGATTTTCCTACCACTGCAATTAGGCTTATGGAGAACTTACTTGCAATAGATCCTGCACAAAGAGGAAGTGCATCTTTTGCTCTTAAGAGTGAGTTCTTTACAACAAAACCACAAGCTTGTGATCCTTCAAGTTTGCCAAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTGCGGGATGAAGAAGCTAAAAGGTGCGTGCTCTTAAGCAAAGAGCATTGGGAATTGGGGGGAGAAAAGGTTGACCGGGATGTGAAAGGATCAAAGGAACCTCGAGCGGGTCCAGCTCCCGATGCTAATGCTGAGTTGGCCACGTCTATGCAGAAAAGGCAGGGTAGGTCCAATCCAAAGAGCCGAAGTGAGCTATTCAACCCCCATCAAGATGCTGCTTCCGGTTTTCCTATTGATCCTCCTAACCCAACACAAGCTCCTAAAGAACCAAGTAAAGATTTGCACATGGAGCATCCTCCTAACCGAGCCTCATACTCCGGGCCACTGGCTCCCGGACCTGGATGGTCAAAACCAGGAAATAAACACGATGATATATCCATTGGTTCAGCAAGAACCAACTTGTCGACACTATCGGGTTTAGTAGCATCGAGGACTTCATTGTCCCAAAAATGCCAAGATATAGTGGGTCCCGCACATTCTGACGCAATAAACCAAGTTGGTATGTTTTTGGATTCACATGAGGCATTGGGGCCCACAAGGAAGCAGGATCGAAAGCATCATACGCAGATTATGGCTGGTTCTCGTCATACAGCAAGTGGAAGAGCCAGCACTAAAGAACCTTTTCCGCATGGTGGTGGGTTGAAGGGAAACAAGATCCATTTCTCGGGTCCATTGTTGGCCGCATCGAACAACAATGTGGATCAGATGCTTAAAGAACACGACCGCCAAATTCAAGAAGCTGCTCGACGTGCCCGCCTCGATAGGGCTAGACTTGGTAAATATCCGGCTCAAGAAACACATACTACATCTAATCCAATATACATTTCTAGTCGCGGAGCT

Network for GWHGAAZE002175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	132	416	1.40E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.101
	SRR3591706	second leaf	15.229
	SRR3591707	mature leaf	17.484
	SRR3591708	Shoot apex	15.021
	SRR3591709	Stem	23.821
	SRR3591710	White floral bud	17.569
	SRR3591711	White flower	22.762
	SRR3591712	Green floral bud	18.544
	SRR3591713	Yellow flower	25.496
SRP173429	SRR8316895	Juvenile bud stage	12.416
	SRR8316896	Juvenile bud stage	18.402
	SRR8316897	Juvenile bud stage	8.301
	SRR8316894	Third green stage	7.075
	SRR8316900	Third green stage	15.407
	SRR8316901	Third green stage	15.955
	SRR8316898	Complete white stage	6.261
	SRR8316899	Complete white stage	28.332
	SRR8316903	Complete white stage	10.534
	SRR8316902	Silver flowering stage	9.498
	SRR8316904	Silver flowering stage	12.011
	SRR8316905	Silver flowering stage	5.341
	SRR8316906	Gold flowering stage	23.695
	SRR8316907	Gold flowering stage	17.122
	SRR8316908	Gold flowering stage	26.125
SRP132670	SRR6706286	Control	14.597
	SRR6706287	Light intensity 50%	15.837
	SRR6706288	Light intensity 20%	15.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.956
	CNS0095593	Slightly white alabastrum(diploid) 2	16.486
	CNS0095594	Slightly white alabastrum(diploid) 3	15.261
	CNS0095595	Whole white alabastrum(diploid) 2	11.865
	CNS0095596	Whole white alabastrum(diploid) 3	7.449
	CNS0095597	Whole white alabastrum(diploid) 4	9.736
	CNS0095598	Silvery flower (diploied) 1	19.644
	CNS0095599	Silvery flower (diploied) 2	16.937
	CNS0095600	Silvery flower (diploied) 3	19.653
	CNS0095601	Golden flower (diploid) 1	16.236
	CNS0095602	Golden flower (diploid) 2	23.688
	CNS0095603	Golden flower (diploid) 3	21.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.762
	CNS0095610	Silvery flower (tetraploid) 1	18.052
	CNS0095611	Silvery flower (tetraploid) 2	17.359
	CNS0095612	Silvery flower (tetraploid) 3	11.809
	CNS0095613	Golden flower (tetraploid) 1	14.962
	CNS0095614	Golden flower (tetraploid) 2	20.389
	CNS0095615	Golden flower (tetraploid) 3	20.237
CRA001975	CRR073297	Stem 1	21.498
	CRR073298	Stem 2	20.490
	CRR073299	Stem 3	15.927
	CRR073300	Leaf 1	19.872
	CRR073301	Leaf 2	22.514
	CRR073302	Leaf 3	15.341
	CRR073303	Juvenile bud 1	17.794
	CRR073304	Juvenile bud 2	11.670
	CRR073305	Juvenile bud 3	23.805
	CRR073306	Third green 1	12.367
	CRR073307	Third green 2	9.655
	CRR073308	Third green 3	9.842
	CRR073309	Second white 1	7.919
	CRR073310	Second white 2	9.518
	CRR073311	Second white 3	10.856
	CRR073312	Silver flowering 1	13.404
	CRR073313	Silver flowering 2	8.912
	CRR073314	Silver flowering 3	10.449
	CRR073315	Gold flowering 1	16.846
	CRR073316	Gold flowering 2	25.721
	CRR073317	Gold flowering 3	11.809
	CRR073318	Tawny withering 1	21.987
	CRR073319	Tawny withering 2	30.478
	CRR073320	Tawny withering 3	18.662