Gene detail

Detail information of GWHGAAZE002152

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71231565	71231777	-
GWHAAZE00000001	mRNA	71231565	71231777	-
GWHAAZE00000001	exon	71231565	71231777	-
GWHAAZE00000001	CDS	71231565	71231777	-

Transcript Sequence
>GWHTAAZE002156 ATGAGTTCAAGGTTCGGCGGTGCACCCGCAGCCGGTCCCACGACTGGACCGACTGCCCTTTTGCCCACCCGGGAGAAAAGGCTCGCCGCCGAGATCCCCGCCGTTACAACTACTCCGGTGCAGTCTGCGCCGATTTCCGGCGAGGAAACTGCACACGTGGCGATAACTGCGAATTCGCTCACGGAGTTTTCGAGTGTTGGCTCCACCCGGTGA

Network for GWHGAAZE002152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	86	353	5.10E-20
PF00005.28	ABC_tran	423	555	6.80E-20
PF00664.24	ABC_membrane	699	957	3.40E-24
PF00005.28	ABC_tran	1031	1179	2.10E-30

Protein Sequence

>GWHPAAZE007955
MASFSTPLFGAGIFSKISFWWLNPLMTQGRKKTIEDKDIPELREEDRAKSCYQSFMDRLNEQEQTNPSSQPSILRTIILCHWKDTMISGIFALLKIITLSAGPLFLNAFIEVADGKQSFKYEGYVLAIALFVSKIAESLSQRHWYFKSRVIGLKVRSMLMAAIYRKQQRLGNDAKKKHSGGEIMNYITMDAYRVGELPYWFHQTWTTALQLCFAVAILFSAVGLATIASLLVIVLTFFCGTPVAKVQLGIQPKLMVAQDRMIKSISEALVCMRVLKLYAWEGRFKKAIEDFRDVELKWLEAVQLRRAYHIFLFWASPVLVSTATFGACYVLGIPLNASNVFTFVATIRLVQDPVRTIPEVIGAVIQAKVSFARIVDFLQAPELESGGAHLRQKWNWDDMNRSVLVRSANLSWEENLGRPTLININLEVKVGEKVAICGEVGSGKSSLLAAILGEFPAIEGNICVYGNVAYVSQSAWIQTGTIRDNILFGSSLDYQRYHQTIDKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYRDADTYLLDDPFSAVDAHTATSLFNEYVMGALAGKTVLLVTHQVDFLPAFDSVLLMSNGEIKHAAPYHQLLSTSQEFQDLVNAHKDTAGTTTAAQSTTSQKGEVLKADKITKTSIIEDKSTACEGDQLIKQEEKELGDKGIKPYMQYLNQNKGLLFFSLITISQIAFMAAQIYQNYWMAANVDNADVSPQRLIVVYFVIGLISTTFLGVRSFGTVVLGMQSSKFIFLQLLSSLFSAPMSFYDSTPLGRILSRVSSDLSIVDLDIAFSLMSALGSTSNAYTSLGVLAAVTWPVLLITIPMLCLAISLQRYYFASAKELMRINGTSKSLVANHVAESIAGAMTIRAFEEEERFFEKNFELIDQNSSPFFHSFAANEWLIQRVEILSAIVLSSSALFMVLLPPGTLSSGFVGMALSYGLSLSMALVLSIQNQCTLANYIISMERLNQYMHLPSEAPQIIKDNRPPQNWPSVGTVDIQDLQIKYRADSPLVLDGISCKFEGGQKVGIVGRTGSGKTTLIGALFRLVEPFGGRIVIDGIDISTIGLHDLRSSFGVLPQDPTLFNGSVRYNLDPLSQHSDQQIWEVLHKCQLGEAVMEKKQGLDTLVAEDGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQKTIRKEFVDCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPENLMKREDSLFGQLVKEYWSHYQSADSH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.426
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.484
	SRR3591709	Stem	0.425
	SRR3591710	White floral bud	1.198
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.497
	SRR3591713	Yellow flower	4.059
SRP173429	SRR8316895	Juvenile bud stage	1.967
	SRR8316896	Juvenile bud stage	2.657
	SRR8316897	Juvenile bud stage	0.508
	SRR8316894	Third green stage	0.344
	SRR8316900	Third green stage	0.501
	SRR8316901	Third green stage	1.989
	SRR8316898	Complete white stage	0.202
	SRR8316899	Complete white stage	3.224
	SRR8316903	Complete white stage	0.270
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.583
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	1.020
	SRR8316907	Gold flowering stage	1.206
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.339
	SRR6706287	Light intensity 50%	0.878
	SRR6706288	Light intensity 20%	1.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.453
	CNS0095593	Slightly white alabastrum(diploid) 2	2.907
	CNS0095594	Slightly white alabastrum(diploid) 3	5.338
	CNS0095595	Whole white alabastrum(diploid) 2	0.098
	CNS0095596	Whole white alabastrum(diploid) 3	1.076
	CNS0095597	Whole white alabastrum(diploid) 4	0.634
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.784
	CNS0095600	Silvery flower (diploied) 3	0.617
	CNS0095601	Golden flower (diploid) 1	0.227
	CNS0095602	Golden flower (diploid) 2	2.407
	CNS0095603	Golden flower (diploid) 3	2.757
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.851
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.224
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.998
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.298
	CNS0095610	Silvery flower (tetraploid) 1	0.326
	CNS0095611	Silvery flower (tetraploid) 2	0.664
	CNS0095612	Silvery flower (tetraploid) 3	0.118
	CNS0095613	Golden flower (tetraploid) 1	1.594
	CNS0095614	Golden flower (tetraploid) 2	0.819
	CNS0095615	Golden flower (tetraploid) 3	2.195
CRA001975	CRR073297	Stem 1	5.735
	CRR073298	Stem 2	1.629
	CRR073299	Stem 3	4.677
	CRR073300	Leaf 1	3.100
	CRR073301	Leaf 2	2.654
	CRR073302	Leaf 3	2.892
	CRR073303	Juvenile bud 1	5.032
	CRR073304	Juvenile bud 2	0.541
	CRR073305	Juvenile bud 3	3.084
	CRR073306	Third green 1	0.149
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.170
	CRR073309	Second white 1	0.974
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.812
	CRR073314	Silver flowering 3	0.200
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.077
	CRR073317	Gold flowering 3	0.222
	CRR073318	Tawny withering 1	1.581
	CRR073319	Tawny withering 2	0.628
	CRR073320	Tawny withering 3	2.251