Detail information of GWHGAAZE002123


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006380732.12.84121E-40hypothetical protein POPTR_0007s11750g [Populus trichocarpa]
Swissprottr|Q8S8S9|MES1_ARATH2E-30Methylesterase 1
trEMBLtr|U5G8D6|U5G8D6_POPTR1E-40Uncharacterized protein {ECO:0000313|EMBL:ERP58529.1}
TAIR10AT2G23620.14E-26methyl esterase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6998486169989614+
GWHAAZE00000001mRNA6998486169989614+
GWHAAZE00000001exon6998486169984983+
GWHAAZE00000001exon6998686069986985+
GWHAAZE00000001exon6998933069989614+
GWHAAZE00000001CDS6998486169984983+
GWHAAZE00000001CDS6998686069986985+
GWHAAZE00000001CDS6998933069989614+
Transcript Sequence

Network for GWHGAAZE002123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.21Adaptin_N172591.10E-36
PF14796.7AP3B1_C4565202.90E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12397AP3B Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0030117cellular_componentmembrane coat

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002123.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 300.511.522.533.544.555.566.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.007
SRR3591706second leaf0.136
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.025
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.026
SRR3591712Green floral bud0.081
SRR3591713Yellow flower0.009
SRP173429 SRR8316895Juvenile bud stage 0.028
SRR8316896Juvenile bud stage 0.133
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.031
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.082
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.233
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.292
SRR8316904Silver flowering stage0.585
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.050
SRP132670SRR6706286Control5.079
SRR6706287Light intensity 50%4.282
SRR6706288Light intensity 20%4.870
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.057
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.060
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.119
CNS0095600Silvery flower (diploied) 30.388
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.007
CNS0095604Slightly white alabastrum(tetraploid) 10.582
CNS0095605Slightly white alabastrum(tetraploid) 20.498
CNS0095606Slightly white alabastrum(tetraploid) 31.437
CNS0095607Whole white alabastrum(tetraploid) 10.316
CNS0095608Whole white alabastrum(tetraploid) 20.087
CNS0095609Whole white alabastrum(tetraploid) 30.654
CNS0095610Silvery flower (tetraploid) 10.296
CNS0095611Silvery flower (tetraploid) 20.121
CNS0095612Silvery flower (tetraploid) 30.042
CNS0095613Golden flower (tetraploid) 10.037
CNS0095614Golden flower (tetraploid) 20.161
CNS0095615Golden flower (tetraploid) 30.025
CRA001975CRR073297Stem 11.093
CRR073298Stem 22.872
CRR073299Stem 35.436
CRR073300Leaf 11.562
CRR073301Leaf 21.415
CRR073302Leaf 31.686
CRR073303Juvenile bud 11.666
CRR073304Juvenile bud 21.179
CRR073305Juvenile bud 31.403
CRR073306Third green 14.568
CRR073307Third green 26.065
CRR073308Third green 35.410
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.241
CRR073316Gold flowering 20.417
CRR073317Gold flowering 30.478
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000