Gene detail

Detail information of GWHGAAZE002098

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275230.1	6.84715E-64	PREDICTED: transcription activator GLK1 [Vitis vinifera]
Swissprot	tr\|Q9SIV3\|GLK1_ARATH	5E-33	Transcription activator GLK1
trEMBL	tr\|B9HGR1\|B9HGR1_POPTR	6E-62	Uncharacterized protein {ECO:0000313\|EMBL:EEE90863.2}
TAIR10	AT2G20570.1	2E-21	GBF's pro-rich region-interacting factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69175316	69177179	-
GWHAAZE00000001	mRNA	69175316	69177179	-
GWHAAZE00000001	exon	69175316	69175363	-
GWHAAZE00000001	exon	69176068	69176208	-
GWHAAZE00000001	exon	69176751	69177179	-
GWHAAZE00000001	CDS	69176751	69177179	-
GWHAAZE00000001	CDS	69176068	69176208	-
GWHAAZE00000001	CDS	69175316	69175363	-

Transcript Sequence
>GWHTAAZE002102 ATGCTTGCAGTGTCAGCTTTGAGGGAGAGAAAAGATGAGAGAGAGTTGGAGAGATTTGCTGTCGGGATTGATGAATTCCCGGAATTCTCGACCGATAATTTGCTCGAAAGCATAGATTTTGATGATCTCTTTGTGGGGATCGACGGTGCAGAATTACTGCCGGATTTGGATCTTTCGGAATTCTCGGGAAGCGGAGGGGAGGAGTACTCGTCGGAGATCAATAACTCGTCGTTTGAGAAAGTCGACGAGGGTTCAAGAAAATCGGATAAAGAGGAGAGAGAGGAAATTAATTTAGGGTCAAAGTTGAATAGTAAAGGAGAAGAGATTGGTAGTGGAAGTGATGAATCTATTGTGGTTAATTCATTGGGAAAGGAAAGTGAGAAAGGTAGAAAGTCATCTAAGAGTCATCATGGAAAGAGGAAAGTGAAGGTGGATTGGACACCAGAATTACACAGGAGATTTGTGCAAGCAGTGGAGCAGCTAGGTGTGGATAAGGCAGTCCCTTCAAGGATTTTAGAGCTTATGGGAATTGATTGTCTCACCCGCCATAACATTGCCAGCCATCTTCAATGTTTCACGGGGACTGGTTCTTACAGCATGAAGTACGTCTCTAATTGA

Network for GWHGAAZE002098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	144	190	2.90E-07
PF18052.2	Rx_N	8	99	8.30E-25
PF00931.23	NB-ARC	199	373	6.40E-34
PF13855.7	LRR_8	565	619	2.00E-07

Protein Sequence

>GWHPAAZE028341
MAVVEIFVSAFVTVLMEKLASSVLLKMARFEGIHTQLKKWSITFKTIQAVLNDAEEKQITDEAVQMWLDDLQHLAYDLDDILDDLLTEALRRESVKETQEASTSKVRRLIPTCCTNFPSPSGLEFQYNMGSKLEKITQELQDLSTRKQYLGLRENVMGIKSYGIGERETSSLVNESDVYGRENDKKEVIKLLLREETRAELKGRFDLKIWVCVSDEFDVFLITKRILRDMASDLNEAQEKLKQKLSNRNFLLVLDDVWNEDYGKWDQFRTPFLAGAAGSVVIVTTRNEKVASTMGKVRGNDQMYRLDKLSDDICLSILARHALSTGDFEENSNFKIVAEKLARKCKGLPLAAKAIGGLLRTNGTANEWEDILNSKIWELPEQSTGILPALRLSYRHLPPHLKRLFAYCSIFPADYVFDKYELVLLWMAEGFLQQSEGKKRMEEMGFLYFNELVSRSFFQPLSGSEESLFVMHDLMNDLAQFVARGICYRVEDEMKCNGQHMVFEKARHSSYIRQAYGVFSKFENYRKFLSLRTFLPLLVHKAEYWRKFYLSSRVVNELLPELRCLRVLSLSGYSITELSNSIGELKHLRYLNLSHTRITHLPESVSDLYNLQTLSLRNCSKLCKLPTRIGGLVNLRHLDIGNTGNLLNMPSWIGKLTSLQTLSKIILDENNTLALTELRGLFDLRGTLAIIGLHNVMNVEDAREANLLSKQGLQDLTLTWSRYFDDSRRVETREYGVLEFLKPYTKLTKLKIEFYGGIEFPSWVRDPSFVDITNLTLSGCERIASLPSLGHLPSLKELFIQGMAGVKNVGDELYGVGQVVAFQSLETLKFENMVGWEEWSFNLANIDDRVGVFPRLLNLRICNCPVLVKISLPNMVGCEDRSFNLANIDDRVGAFPRLHNLTIRDCPELVKISLPNLPSLWVLDIRRCDEVVLRGIVSVASLTTITMKGILGLLKLHEEVVRSLGELQYLEIQNCDELRYLWEEEESSTHNLGKLVELYFSGCDKLEKLPDLESCLPSLKKLDIYNCSRLQSLQTTKNLPTKENELIESNSSHHVESCSHLESLSIVECKSLTCFLPGHNLPTTLKHLSVHYCGNLEPDSENFWLLNSSSMPSLLESISIWKWVKLASLPRCLLNFIRLTNLRLDGCPGLESFLGRGLPPNLRRLEISNCENLKYLPDDQMQSLTSLVSVEVRGCPCLESFPQGRWPPNLEVLWIGNIKKQPISKWGLHRLPTSLFYFSIHGDIPGLTSFLGVDIKLPTSLTTLNLLDVQSIESLSMGFENLTSLQYLNIYNCPKLQSLPDTLLPTLSNLRIYNCPLLKERCLKEKRDYWPKISHIPCVEIEDKLIQWQ

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.811
	SRR3591706	second leaf	55.165
	SRR3591707	mature leaf	85.550
	SRR3591708	Shoot apex	27.644
	SRR3591709	Stem	12.612
	SRR3591710	White floral bud	1.809
	SRR3591711	White flower	2.875
	SRR3591712	Green floral bud	4.011
	SRR3591713	Yellow flower	2.339
SRP173429	SRR8316895	Juvenile bud stage	4.784
	SRR8316896	Juvenile bud stage	5.105
	SRR8316897	Juvenile bud stage	2.621
	SRR8316894	Third green stage	1.497
	SRR8316900	Third green stage	2.420
	SRR8316901	Third green stage	1.844
	SRR8316898	Complete white stage	0.345
	SRR8316899	Complete white stage	2.702
	SRR8316903	Complete white stage	0.981
	SRR8316902	Silver flowering stage	0.625
	SRR8316904	Silver flowering stage	0.478
	SRR8316905	Silver flowering stage	0.237
	SRR8316906	Gold flowering stage	2.157
	SRR8316907	Gold flowering stage	2.628
	SRR8316908	Gold flowering stage	2.940
SRP132670	SRR6706286	Control	4.937
	SRR6706287	Light intensity 50%	4.400
	SRR6706288	Light intensity 20%	3.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.964
	CNS0095593	Slightly white alabastrum(diploid) 2	1.492
	CNS0095594	Slightly white alabastrum(diploid) 3	1.037
	CNS0095595	Whole white alabastrum(diploid) 2	0.799
	CNS0095596	Whole white alabastrum(diploid) 3	0.775
	CNS0095597	Whole white alabastrum(diploid) 4	1.388
	CNS0095598	Silvery flower (diploied) 1	5.417
	CNS0095599	Silvery flower (diploied) 2	3.027
	CNS0095600	Silvery flower (diploied) 3	2.095
	CNS0095601	Golden flower (diploid) 1	3.143
	CNS0095602	Golden flower (diploid) 2	2.696
	CNS0095603	Golden flower (diploid) 3	3.625
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.290
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.704
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.339
	CNS0095610	Silvery flower (tetraploid) 1	2.064
	CNS0095611	Silvery flower (tetraploid) 2	5.453
	CNS0095612	Silvery flower (tetraploid) 3	1.283
	CNS0095613	Golden flower (tetraploid) 1	1.204
	CNS0095614	Golden flower (tetraploid) 2	1.553
	CNS0095615	Golden flower (tetraploid) 3	0.280
CRA001975	CRR073297	Stem 1	11.558
	CRR073298	Stem 2	8.391
	CRR073299	Stem 3	8.341
	CRR073300	Leaf 1	2.394
	CRR073301	Leaf 2	2.457
	CRR073302	Leaf 3	3.195
	CRR073303	Juvenile bud 1	1.445
	CRR073304	Juvenile bud 2	0.810
	CRR073305	Juvenile bud 3	3.644
	CRR073306	Third green 1	1.953
	CRR073307	Third green 2	1.787
	CRR073308	Third green 3	2.041
	CRR073309	Second white 1	6.101
	CRR073310	Second white 2	5.986
	CRR073311	Second white 3	7.809
	CRR073312	Silver flowering 1	10.282
	CRR073313	Silver flowering 2	9.160
	CRR073314	Silver flowering 3	6.745
	CRR073315	Gold flowering 1	9.842
	CRR073316	Gold flowering 2	16.359
	CRR073317	Gold flowering 3	9.911
	CRR073318	Tawny withering 1	2.490
	CRR073319	Tawny withering 2	1.322
	CRR073320	Tawny withering 3	3.109