Detail information of GWHGAAZE002093


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007198928.10hypothetical protein PRUPE_ppa001162mg [Prunus persica]
Swissprottr|Q6XJG8|PSD2B_ARATH026S proteasome non-ATPase regulatory subunit 2 homolog B
trEMBLtr|M5VGN0|M5VGN0_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ00127.1}
TAIR10AT4G28470.1026S proteasome regulatory subunit S2 1B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6913422369141422-
GWHAAZE00000001mRNA6913422369141422-
GWHAAZE00000001exon6913422369134402-
GWHAAZE00000001exon6913449669134604-
GWHAAZE00000001exon6913483669134921-
GWHAAZE00000001exon6913540769135520-
GWHAAZE00000001exon6913562869135687-
GWHAAZE00000001exon6913639469136609-
GWHAAZE00000001exon6913777669137892-
GWHAAZE00000001exon6913800669138227-
GWHAAZE00000001exon6913960169139711-
GWHAAZE00000001exon6913980369139943-
GWHAAZE00000001exon6914030069140380-
GWHAAZE00000001exon6914062569140732-
GWHAAZE00000001exon6914102669141184-
GWHAAZE00000001exon6914129169141422-
GWHAAZE00000001CDS6914129169141422-
GWHAAZE00000001CDS6914102669141184-
GWHAAZE00000001CDS6914062569140732-
GWHAAZE00000001CDS6914030069140380-
GWHAAZE00000001CDS6913980369139943-
GWHAAZE00000001CDS6913960169139711-
GWHAAZE00000001CDS6913800669138227-
GWHAAZE00000001CDS6913777669137892-
GWHAAZE00000001CDS6913639469136609-
GWHAAZE00000001CDS6913562869135687-
GWHAAZE00000001CDS6913540769135520-
GWHAAZE00000001CDS6913483669134921-
GWHAAZE00000001CDS6913449669134604-
GWHAAZE00000001CDS6913422369134402-
Transcript Sequence

Network for GWHGAAZE002093

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17781.2RPN1_RPN2_N201003.30E-16
PF18051.2RPN1_C5796114.10E-13
PF03985.14Paf1732632.70E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03028PSMD2, RPN1 Proteasome map03050
MAPK signaling pathway - yeastmap04011

Gene Ontology

GO term OntologyName
GO:0006368biological_processtranscription elongation from RNA polymerase II promoter
GO:0016570biological_processhistone modification
GO:0016593cellular_componentCdc73/Paf1 complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.522
SRR3591706second leaf0.459
SRR3591707mature leaf0.026
SRR3591708Shoot apex1.239
SRR3591709Stem0.618
SRR3591710White floral bud1.221
SRR3591711White flower1.496
SRR3591712Green floral bud1.002
SRR3591713Yellow flower0.863
SRP173429 SRR8316895Juvenile bud stage 0.985
SRR8316896Juvenile bud stage 1.237
SRR8316897Juvenile bud stage 0.572
SRR8316894Third green stage 0.727
SRR8316900Third green stage 1.262
SRR8316901Third green stage 1.276
SRR8316898Complete white stage 0.576
SRR8316899Complete white stage 1.199
SRR8316903Complete white stage 1.176
SRR8316902Silver flowering stage0.443
SRR8316904Silver flowering stage0.606
SRR8316905Silver flowering stage0.158
SRR8316906Gold flowering stage 0.681
SRR8316907Gold flowering stage 1.113
SRR8316908Gold flowering stage 0.944
SRP132670SRR6706286Control1.345
SRR6706287Light intensity 50%1.831
SRR6706288Light intensity 20%1.867
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.529
CNS0095593Slightly white alabastrum(diploid) 20.742
CNS0095594Slightly white alabastrum(diploid) 30.813
CNS0095595Whole white alabastrum(diploid) 20.507
CNS0095596Whole white alabastrum(diploid) 30.940
CNS0095597Whole white alabastrum(diploid) 40.980
CNS0095598Silvery flower (diploied) 10.762
CNS0095599Silvery flower (diploied) 20.712
CNS0095600Silvery flower (diploied) 30.640
CNS0095601Golden flower (diploid) 10.467
CNS0095602Golden flower (diploid) 20.819
CNS0095603Golden flower (diploid) 30.491
CNS0095604Slightly white alabastrum(tetraploid) 12.260
CNS0095605Slightly white alabastrum(tetraploid) 22.064
CNS0095606Slightly white alabastrum(tetraploid) 33.145
CNS0095607Whole white alabastrum(tetraploid) 11.289
CNS0095608Whole white alabastrum(tetraploid) 20.983
CNS0095609Whole white alabastrum(tetraploid) 32.101
CNS0095610Silvery flower (tetraploid) 11.521
CNS0095611Silvery flower (tetraploid) 21.870
CNS0095612Silvery flower (tetraploid) 32.440
CNS0095613Golden flower (tetraploid) 11.449
CNS0095614Golden flower (tetraploid) 21.371
CNS0095615Golden flower (tetraploid) 30.744
CRA001975CRR073297Stem 12.219
CRR073298Stem 21.778
CRR073299Stem 30.574
CRR073300Leaf 12.437
CRR073301Leaf 22.382
CRR073302Leaf 30.821
CRR073303Juvenile bud 10.615
CRR073304Juvenile bud 20.208
CRR073305Juvenile bud 30.863
CRR073306Third green 10.080
CRR073307Third green 20.131
CRR073308Third green 30.028
CRR073309Second white 10.058
CRR073310Second white 20.049
CRR073311Second white 30.140
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.092
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.224
CRR073316Gold flowering 20.303
CRR073317Gold flowering 30.117
CRR073318Tawny withering 10.992
CRR073319Tawny withering 20.808
CRR073320Tawny withering 31.445