Gene detail

Detail information of GWHGAAZE002081

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631587.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
COG	YP_004883321.1	6E-86	putative RNA helicase
Swissprot	tr\|P93008\|RH21_ARATH	0	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR10	AT2G33730.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68813562	68815052	+
GWHAAZE00000001	mRNA	68813562	68815052	+
GWHAAZE00000001	exon	68813562	68815052	+
GWHAAZE00000001	CDS	68813562	68815052	+

Transcript Sequence
>GWHTAAZE002085 ATGGACCGCAGGGAGCAGAGAATGGTTGCAGCCAAGAACGAGAAAGAGCTTAGTGTAAAAATTTGGAAGAAGGAGGGCGTTGAGGAAAAGCCGGAGGAGGCTGCTGCACTTAGACTGAAGAAGGAGGCAGTTGACACTTACAACACTTTTGACATGAGGGTCTACCGCCACTGGTCGGATAAGCTTGAAGAAATGACGGAGAGGGACTGGAGGATTTTCAAGGAGGATTTCAACATTTCCTATAAGGGTGGTTCTAGGAGGATTCCCCAGCCGATGAGGAACTGGGCCGAGAGTCGACTGAGTTCTGAGCTGTTGGATGCGGTAGATAGGGCTGGGTACAAGACACCATCTCCCATTCAGATGGCTTACATTCCGCTTGGACTGCAGCAACGCGACGTCATAGGTGTTGCTCAGACCGGCTCTGGTAAAACTGCTGCTTTTGTTCTTCCTATGTTGACTTACATATCTAGGCTCCCTCGTATGAGTAAAGAGAATGCAGCAGAGGGGCCTTATGCTGTTGTGATGGCACCTACTCATGAACTTGTGGAGCACATTGAGAAAGAAACTGTCAAGCTTGCGCACTACTTGGGTATCAATGTGGTTTCAATCATGGGCGGGCAGTCCATTGAGGAGCAAGGATTCAGGATTACGCAAGGTTGTGAGGTTGTGATTGCTACTCCAGGCCGTCTAATTGATTGCTTGAAGAAGCGCTACGTTGTATTGAACCAGTGTAATTATGTTGTTCTAGACGAGGCTGATCGCATGATTGATAAGAATTTCGAACTGCAAGTTGTGGGTGTTTTGAATGCAATTCCTTCTAGCAATTTCAAACCAGAGAATGAGGATGAAGGGCTTGATGAGAAAAAGATCTATAGAACCACTTATATGTTCAGCGCTACCATGCCACCGGCCGTGGAGCATCTTGCAAGGAAGTACTTGAGAAATCCGGTGGTGGTGAGGATTGGTGCTGCTGGAATGGTGACTGACCTCATTACTCAGCATGTGATTATGACAAAGGAATCAGAAAAGCTGTATAGGTTGCAGAATTTGCTCAACAAACTTGGAGATAAGACAGCAATAGTGTTTGTAAACACGAGAAATTCAGCTGATGGGCTTACCAAGAATTTGGTTAAAGCAGGATATTCGGTTGCACCTTTGCACGGTGGCAAGTCACAGAACCAGAGAGAAACCAGCATCGATGGTTTTAGGACCAAGAGATACAAAGTGTTGGTTGCCACTGATGTAGCAGGACGTGGGATCGATATACCCGATGTGGCCTGTGTAATAAATTTTGATATGCCTGGTGATATCGAGAAGTACACTCACCGAATTGGACGAACTGGTCGTGCTGGGAAGACGGGTGTAGCCATCACATTTTTGACTTTGGATGATAATAATGTTTTCTATGATCTGAAGCGGACTCTTATTCAGAGTAACAGTCGTGTACCTCCTGAGCTTGCTAGACACAAGGCTTCGAATGTTAAACCATGA

Network for GWHGAAZE002081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	118	307	2.50E-44
PF00271.32	Helicase_C	343	451	3.20E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.365
	SRR3591709	Stem	0.480
	SRR3591710	White floral bud	2.663
	SRR3591711	White flower	3.227
	SRR3591712	Green floral bud	1.609
	SRR3591713	Yellow flower	2.377
SRP173429	SRR8316895	Juvenile bud stage	0.410
	SRR8316896	Juvenile bud stage	1.458
	SRR8316897	Juvenile bud stage	0.839
	SRR8316894	Third green stage	0.494
	SRR8316900	Third green stage	1.679
	SRR8316901	Third green stage	1.140
	SRR8316898	Complete white stage	0.708
	SRR8316899	Complete white stage	1.615
	SRR8316903	Complete white stage	1.236
	SRR8316902	Silver flowering stage	0.459
	SRR8316904	Silver flowering stage	1.151
	SRR8316905	Silver flowering stage	0.346
	SRR8316906	Gold flowering stage	1.388
	SRR8316907	Gold flowering stage	0.807
	SRR8316908	Gold flowering stage	3.164
SRP132670	SRR6706286	Control	0.714
	SRR6706287	Light intensity 50%	0.909
	SRR6706288	Light intensity 20%	1.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.668
	CNS0095593	Slightly white alabastrum(diploid) 2	1.056
	CNS0095594	Slightly white alabastrum(diploid) 3	1.029
	CNS0095595	Whole white alabastrum(diploid) 2	1.104
	CNS0095596	Whole white alabastrum(diploid) 3	1.184
	CNS0095597	Whole white alabastrum(diploid) 4	1.758
	CNS0095598	Silvery flower (diploied) 1	1.114
	CNS0095599	Silvery flower (diploied) 2	1.400
	CNS0095600	Silvery flower (diploied) 3	0.928
	CNS0095601	Golden flower (diploid) 1	0.881
	CNS0095602	Golden flower (diploid) 2	0.981
	CNS0095603	Golden flower (diploid) 3	0.807
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.543
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.589
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.051
	CNS0095610	Silvery flower (tetraploid) 1	2.410
	CNS0095611	Silvery flower (tetraploid) 2	2.132
	CNS0095612	Silvery flower (tetraploid) 3	3.816
	CNS0095613	Golden flower (tetraploid) 1	1.885
	CNS0095614	Golden flower (tetraploid) 2	2.316
	CNS0095615	Golden flower (tetraploid) 3	2.563
CRA001975	CRR073297	Stem 1	1.821
	CRR073298	Stem 2	1.319
	CRR073299	Stem 3	0.928
	CRR073300	Leaf 1	1.783
	CRR073301	Leaf 2	1.446
	CRR073302	Leaf 3	0.967
	CRR073303	Juvenile bud 1	1.187
	CRR073304	Juvenile bud 2	0.710
	CRR073305	Juvenile bud 3	1.131
	CRR073306	Third green 1	0.601
	CRR073307	Third green 2	0.397
	CRR073308	Third green 3	0.937
	CRR073309	Second white 1	0.255
	CRR073310	Second white 2	0.218
	CRR073311	Second white 3	0.718
	CRR073312	Silver flowering 1	0.665
	CRR073313	Silver flowering 2	0.438
	CRR073314	Silver flowering 3	0.579
	CRR073315	Gold flowering 1	0.004
	CRR073316	Gold flowering 2	0.182
	CRR073317	Gold flowering 3	0.170
	CRR073318	Tawny withering 1	0.943
	CRR073319	Tawny withering 2	0.914
	CRR073320	Tawny withering 3	1.475