Gene detail

Detail information of GWHGAAZE002071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631587.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
COG	YP_002762282.1	1E-83	ATP-dependent RNA helicase RhlE
Swissprot	tr\|P93008\|RH21_ARATH	0	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR10	AT2G33730.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68620267	68623085	+
GWHAAZE00000001	mRNA	68620267	68623085	+
GWHAAZE00000001	exon	68620267	68620696	+
GWHAAZE00000001	exon	68621590	68623085	+
GWHAAZE00000001	CDS	68620267	68620696	+
GWHAAZE00000001	CDS	68621590	68623085	+

Transcript Sequence
>GWHTAAZE002075 ATGAAACGCTCCTCGGAACACAGCCGCCACCATCACCACCGCCCCTCTCGTGATTACAACCGGAACCACCGTGATTATGAACGCGAGGAAGAACAGAAGAATAAGAGGACTCGGGATCACCGTGACTACGTACGCGAGGAAGAACAGAAGAAGAAGAGGATTCGGGATCACCGTGATTACGTACGCGAGGAAGAACAGAAGAAGAAGAAGGCTCGGATGGAGAAACTGGCGGAGGAGCGAGAGCGGGAGAAGGAACTCGAAGCCATAAAAGAGCAGTATCTGGGACTAGGCAGTAAACAACCGAAGAAACGTGTGATTAAGCCTAGCGACAAGTTCCGTTTCTCTTTCGATTGGGATTACACCACCGAGGACACCTCCCGGGACTTGAATTCCCTCTATCAAAACCCTCACCAGGCCCTTCTCTTGTTCGGTATGGATCGCAGGGAACAGAGAATGGTTGCAGCCAAGAACGAGAAAGAGCTTTGTGTAAAAATTTGGAAGAAGGAGGGCGTTGAGGAAAAGCCGGAGGAGGCTGCTGCACGTAGACTGAAGAAGGAGGCAGTTGACACTTACAACACTTTTGACATGAGGGTCGACCGCCACTGGTCAGATAAGAAGCTCGAAGAAATGACGGAGAGGGACTGGAGGATTTTCAAGGAGGATTTCAACATTTCCTATAAGGGTGGTTCGAGGAGGATTCCCCAGCCGATGAGGAACTGGGCCGAGAGTCGACTGTGTTCTGAGCTGTTGGATGCGGTAGATAGGGCTGGGTACAAGACACCATCTCCCATTCAGATGGCTTCCATTCCGCTTGGACTGCAGCAACGCGACGTCATAGGTGTTGCTCAGACCGGCTCTGGTAAAACTGCTGCTTTTGTTCTTCCTATGTTGACTTACATATCTAGGCTCCCTCGTATGAGTAAAGAGAATGCAGCAGAGGGGCCTTATGCTGTTGTGATGGCACCTACTCATGAACTTGTGGAGCACATTGAGAAAGAAACTGTCAAGCTTGCGCACTACTTGGGTATCAATGTGGTTTCAATCATGGGTGGGCAGTCCATTGAGGAGCAAGGATTAAGGATTACACAAGGTTGTGAGGTTGTGATTGCTACTCCAGGCCGTCTAATTGAATGCTTGAAGAAGCGCTACGTTGTATTGAACCAGTGTAATTATGTTGTTCTAGACGAGGCTGATCGCATGATTGATAAGAATTTCGAACCGCAAGTTGTGGGTGTTTTGGATGCAATTCCTTCTAGCAATTTCAAACGAGAGAATGAGGATGAAGAGCTTGATGAGAAAAAGATCTATAGAACCACTTATATGTTCAGCGCTACCATGCCACCGGCCGTGGAGCATCTTGCAAGGAAGTACTTGAGAAATCCAGTGGTGGTGAGGATTGGCACTTCTGGAATGGTGACTGACCTCATTACTCAGCATGTGATTATGACAAAGGAATCAGAAAAGCTGTATAGGTTGCAGAATTTGCTTAACGAACTTGGAGATAAGACAGCAATAGTGTTTGTAAACACGAGAAATTCAGCTGATGGGCTTACCAAGAATTTGGTTAAAGCAGGATATTCGGTTGCACCTTTGCACGGTGGCAAGTCACAGAACCAGAGAGAAACTAGCATCGATGGTTTTAGGACCAAGAGATACAAAGTGTTGGTTGCCACTGATATAGCAGGACGTGGGATCGATATACCCGATGTGGCCTGTGTAATAAATTTTGATATGCCTGGTGATATCGAGAAGTACACTCACCGAATTGGACGAACTGGTCGTGCTGGGAAGACGGGTGTAGCCATCACATTTTTGACTTTGGATGATAATAATGTTTTCTATGATCTGAAGCGGACTCTTATTCAGAGTAACAGTCGTGTACCTCCTGAGCTTGCTAGACACAAGGCTTCGAATGTTAAACCATGA

Network for GWHGAAZE002071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	263	452	3.40E-44
PF00271.32	Helicase_C	488	596	6.00E-32
PF01554.19	MatE	49	209	2.70E-37
PF01554.19	MatE	270	433	1.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0015297	molecular_function	antiporter activity
GO:0042910	molecular_function	xenobiotic transmembrane transporter activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.250
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.309
	SRR3591709	Stem	0.379
	SRR3591710	White floral bud	4.888
	SRR3591711	White flower	5.076
	SRR3591712	Green floral bud	2.333
	SRR3591713	Yellow flower	3.745
SRP173429	SRR8316895	Juvenile bud stage	1.529
	SRR8316896	Juvenile bud stage	2.055
	SRR8316897	Juvenile bud stage	0.277
	SRR8316894	Third green stage	1.535
	SRR8316900	Third green stage	2.269
	SRR8316901	Third green stage	2.256
	SRR8316898	Complete white stage	2.842
	SRR8316899	Complete white stage	2.903
	SRR8316903	Complete white stage	4.627
	SRR8316902	Silver flowering stage	2.899
	SRR8316904	Silver flowering stage	4.464
	SRR8316905	Silver flowering stage	1.738
	SRR8316906	Gold flowering stage	4.642
	SRR8316907	Gold flowering stage	4.883
	SRR8316908	Gold flowering stage	2.390
SRP132670	SRR6706286	Control	2.864
	SRR6706287	Light intensity 50%	3.422
	SRR6706288	Light intensity 20%	3.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.001
	CNS0095593	Slightly white alabastrum(diploid) 2	2.658
	CNS0095594	Slightly white alabastrum(diploid) 3	2.691
	CNS0095595	Whole white alabastrum(diploid) 2	2.355
	CNS0095596	Whole white alabastrum(diploid) 3	2.474
	CNS0095597	Whole white alabastrum(diploid) 4	1.469
	CNS0095598	Silvery flower (diploied) 1	4.046
	CNS0095599	Silvery flower (diploied) 2	3.023
	CNS0095600	Silvery flower (diploied) 3	5.307
	CNS0095601	Golden flower (diploid) 1	2.750
	CNS0095602	Golden flower (diploid) 2	3.405
	CNS0095603	Golden flower (diploid) 3	3.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.181
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.491
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.188
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.213
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.262
	CNS0095610	Silvery flower (tetraploid) 1	0.241
	CNS0095611	Silvery flower (tetraploid) 2	0.153
	CNS0095612	Silvery flower (tetraploid) 3	0.231
	CNS0095613	Golden flower (tetraploid) 1	0.217
	CNS0095614	Golden flower (tetraploid) 2	0.138
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	3.157
	CRR073298	Stem 2	3.252
	CRR073299	Stem 3	1.787
	CRR073300	Leaf 1	3.550
	CRR073301	Leaf 2	3.203
	CRR073302	Leaf 3	1.263
	CRR073303	Juvenile bud 1	1.280
	CRR073304	Juvenile bud 2	1.969
	CRR073305	Juvenile bud 3	2.478
	CRR073306	Third green 1	2.669
	CRR073307	Third green 2	1.981
	CRR073308	Third green 3	2.755
	CRR073309	Second white 1	2.225
	CRR073310	Second white 2	1.829
	CRR073311	Second white 3	1.837
	CRR073312	Silver flowering 1	1.552
	CRR073313	Silver flowering 2	0.656
	CRR073314	Silver flowering 3	1.594
	CRR073315	Gold flowering 1	0.653
	CRR073316	Gold flowering 2	0.757
	CRR073317	Gold flowering 3	0.304
	CRR073318	Tawny withering 1	1.578
	CRR073319	Tawny withering 2	1.119
	CRR073320	Tawny withering 3	1.948