Detail information of GWHGAAZE002069


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280094.10PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera]
COGYP_003690422.10Ketol-acid reductoisomerase
Swissprottr|Q05758|ILV5_ARATH0Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBLtr|A5AGN5|A5AGN5_VITVI0Ketol-acid reductoisomerase {ECO:0000256|PIRNR:PIRNR000118}
TAIR10AT3G58610.30ketol-acid reductoisomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6854302668549340-
GWHAAZE00000001mRNA6854302668549340-
GWHAAZE00000001exon6854302668543394-
GWHAAZE00000001exon6854436068544515-
GWHAAZE00000001exon6854500568545172-
GWHAAZE00000001exon6854564868545742-
GWHAAZE00000001exon6854582668545943-
GWHAAZE00000001exon6854637368546600-
GWHAAZE00000001exon6854716468547304-
GWHAAZE00000001exon6854745468547519-
GWHAAZE00000001exon6854874168548833-
GWHAAZE00000001exon6854904468549340-
GWHAAZE00000001CDS6854904468549340-
GWHAAZE00000001CDS6854874168548833-
GWHAAZE00000001CDS6854745468547519-
GWHAAZE00000001CDS6854716468547304-
GWHAAZE00000001CDS6854637368546600-
GWHAAZE00000001CDS6854582668545943-
GWHAAZE00000001CDS6854564868545742-
GWHAAZE00000001CDS6854500568545172-
GWHAAZE00000001CDS6854436068544515-
GWHAAZE00000001CDS6854302668543394-
Transcript Sequence

Network for GWHGAAZE002069

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07991.13IlvN1202948.20E-31
PF01450.20IlvC3034324.30E-23
PF01450.20IlvC4455132.10E-07
PF04759.14DUF617391922.60E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00053ilvC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082biological_processbranched-chain amino acid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0010274biological_processhydrotropism
GO:0004455molecular_functionketol-acid reductoisomerase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf72.670
SRR3591706second leaf62.845
SRR3591707mature leaf67.838
SRR3591708Shoot apex109.619
SRR3591709Stem62.438
SRR3591710White floral bud63.971
SRR3591711White flower72.046
SRR3591712Green floral bud89.635
SRR3591713Yellow flower50.285
SRP173429 SRR8316895Juvenile bud stage 46.868
SRR8316896Juvenile bud stage 66.916
SRR8316897Juvenile bud stage 17.732
SRR8316894Third green stage 23.796
SRR8316900Third green stage 74.545
SRR8316901Third green stage 63.733
SRR8316898Complete white stage 16.255
SRR8316899Complete white stage 75.225
SRR8316903Complete white stage 24.718
SRR8316902Silver flowering stage13.391
SRR8316904Silver flowering stage13.858
SRR8316905Silver flowering stage7.469
SRR8316906Gold flowering stage 24.227
SRR8316907Gold flowering stage 24.003
SRR8316908Gold flowering stage 22.113
SRP132670SRR6706286Control71.753
SRR6706287Light intensity 50%75.588
SRR6706288Light intensity 20%83.079
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.587
CNS0095593Slightly white alabastrum(diploid) 256.569
CNS0095594Slightly white alabastrum(diploid) 341.415
CNS0095595Whole white alabastrum(diploid) 247.275
CNS0095596Whole white alabastrum(diploid) 347.591
CNS0095597Whole white alabastrum(diploid) 437.728
CNS0095598Silvery flower (diploied) 166.798
CNS0095599Silvery flower (diploied) 255.912
CNS0095600Silvery flower (diploied) 355.844
CNS0095601Golden flower (diploid) 157.354
CNS0095602Golden flower (diploid) 270.033
CNS0095603Golden flower (diploid) 377.341
CNS0095604Slightly white alabastrum(tetraploid) 142.348
CNS0095605Slightly white alabastrum(tetraploid) 235.493
CNS0095606Slightly white alabastrum(tetraploid) 376.927
CNS0095607Whole white alabastrum(tetraploid) 115.250
CNS0095608Whole white alabastrum(tetraploid) 220.502
CNS0095609Whole white alabastrum(tetraploid) 364.195
CNS0095610Silvery flower (tetraploid) 144.350
CNS0095611Silvery flower (tetraploid) 248.635
CNS0095612Silvery flower (tetraploid) 335.702
CNS0095613Golden flower (tetraploid) 130.509
CNS0095614Golden flower (tetraploid) 239.090
CNS0095615Golden flower (tetraploid) 319.996
CRA001975CRR073297Stem 199.023
CRR073298Stem 293.975
CRR073299Stem 3114.444
CRR073300Leaf 1101.595
CRR073301Leaf 296.073
CRR073302Leaf 3108.486
CRR073303Juvenile bud 1109.715
CRR073304Juvenile bud 281.948
CRR073305Juvenile bud 3111.088
CRR073306Third green 116.170
CRR073307Third green 215.808
CRR073308Third green 316.023
CRR073309Second white 126.873
CRR073310Second white 219.133
CRR073311Second white 318.621
CRR073312Silver flowering 121.222
CRR073313Silver flowering 228.331
CRR073314Silver flowering 324.863
CRR073315Gold flowering 172.257
CRR073316Gold flowering 2111.295
CRR073317Gold flowering 395.632
CRR073318Tawny withering 180.819
CRR073319Tawny withering 250.826
CRR073320Tawny withering 362.916