Gene detail

Detail information of GWHGAAZE002059

Functional Annotation

Database	Orthologs	Annotation
Nr	I1SSI5.1MAX2A_PETHY	RecName: Full=F-box/LRR-repeat MAX2 homolog A; AltName: Full=F-box and leucine-rich repeat MAX2 homolog A [Petunia x hybrida]
Swissprot	tr\|I1SSI5\|MAX2A_PETHY	F-box/LRR-repeat MAX2 homolog A
trEMBL	tr\|I1SSI6\|I1SSI6_PETHY	MAX2B {ECO:0000313\|EMBL:AEB97385.1}
TAIR10	AT2G42620.1	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68411669	68413789	+
GWHAAZE00000001	mRNA	68411669	68413789	+
GWHAAZE00000001	exon	68411669	68413058	+
GWHAAZE00000001	exon	68413092	68413789	+
GWHAAZE00000001	CDS	68411669	68413058	+
GWHAAZE00000001	CDS	68413092	68413789	+

Transcript Sequence
>GWHTAAZE002063 ATGGCCGGAAGCTCGTCCATAAAAACAACAATTGCCGACCTTCCGGACGTGATCCTATCCAACATAATCGCCCTAATCACCTCCGTCCGCAGCCGCAACTCCGCCGCGCTCGTCTGCCGCAAATGGCTGTTGCTGGAACGAGCCACCCGCACCTCCCTGACCCTCCGCGGCAACGCCCTCCGCGACCTCTTCATGGTCCCTTCCTGCTTCCGATCCGTCACACACCTCGACCTCTCCCTCCTCTCCCCCTGGGGCCATCCACTCCTCTCCTCAGGCGGCCCGGACTCCGCTCTCTCCGCCAACATCCTCGGAGACTCCTTCCCAGACGTAGAGTCACTAACTCTCTACGCCCGTAACCCTTCAACTCTGCAGTTATTGGCCCCGAAGTGGCGGCAACTGAAGCACCTGAAACTCGTGAGGTGGCATCAGCGCCCTCAGTTGCCTTACGGTTCCGATTTAGCACCGCTCTTTGCGAATAGTCGGTGTCTTGTTTCGCTTGATTTGTCCAGTTTTTATTGCTGGACTGATGATATTCCCGCAGTTTTTGAATCTCATTCTTCTGTTACTGAAAACCTAATTCGACTTAATCTGCTCAACCCTTCGTTTTCCGAAGGGTTTAAAGGGCAGGAGCTCGAAGAAATTACGAGTTCTTGTCCTAATTTGATTGATTTTAAAGTTGCTTCTACGTTTGATCCGAGGTACATTGGGTTTGTTGGGGATGAGACACTGATTTCAATAGTTGGTAATTGTAAGAAACTAAAAATTCTTCATCTGGTTGATTCGTCGGGTTTACTGAACCCGAGGAGTGATCCGAATGATGAAGGGTTTACTAGTGAAGATGCTAGGATTACTGTGCCGGGTTTGATTGAGTTCTTTTCAGGGATTCCTATGATTGAAGAGCTGGTGCTAGATGTTTGTAAAAATGTTAGAGAGAGCGGGCCCGCTTTAGAAGTGTTGAATTCGAAATGCCCAAGGTTGAAATCGCTTAAGTTGGGGCAGTTTCATGGGATTTGTATGGCGATCGAATCGAAGCTAGATGGGATTGCTCTATGTCAAGGGCTTGAATCTTTGTCGATTAGGAATTCGGCTGATTTGACGGATCTTGGGCTGATAGCCATAGCTAGAGGGTGTTCAAGATTGGCAAAGTTTGAAGTGCATGGCTGCAAGAAGATTACGTTTAAAGGAATGGGGACATTGGCTTGTTTGCTTCATAAAACCTTGATTGAAGTCAAGATTTCTTGTTGCAAGAACCTGGGTGCAGCTTCGTCTTTGAAAGCTTTGGAGCCAATACGGAAGAAAATCCAGCGGCTCCACATTGATTGCGTGTGGGACAGTGTTGAACAGTTCGAGAATCTTGATGGGGTTGAGTATAATTTCGACCTAAACAAAGATGACTACGATGATCTAAATTGCAACAAGAACAAGAAATGCAAGTACTCTTATGACTTAAACTGCAGTGATAACGGCGATGTGGATGACTACAAGTCATGGGAGAATCTGCAATACCTGTCACTCTGGATATCAGTTGGAGAACTTTTAACTCCATTGCCAATGGCGGGTCTAAAAGATTGTCCAGTTTTAAATGAGATCCGGATAAAAGTAGATGGTGACTGCAGGTACTGGTCAAGGCCATCTGAGCGAGCATTTGGGCTCAGTTGCCTTGTCAGGTACCCGAATCTAACAAAAATGCATTTGGATTGTGGAGAAACTATTGGGTATGCTCACACAGCTCCATCGGGCCAAATGGACTTGAGCTTATGGGAGAGGTTTTATTTGTTGGGGATCAAAGAGTTAAGTTTGTGTGAGCTTGATTATTGGCCACCACAAGATAGGGATGTGAACCAGAGGAGCCTTTCTTTGCCAGCTGCTGGTTTGCTTCAAGAGTGTGTGATGTTGAGGAAGTTGTTCATTCATGGGACTGCCAATGAACACTTTATGAAGTTTTTGTTGAGGATACCGAATTTGAGGGACGTGCAGCTTCGAGAAGATTACTATCCGGCGCCTGAGAATGATATGAGTACAGAGATGAGGGCGGATTCTTGTAGTCGGTTCGAAGATGAGTTGAATAGGAGGCACATTAGTGATTGA

Network for GWHGAAZE002059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	14	51	1.60E-09
PF01012.22	ETF	25	203	4.70E-35
PF00766.20	ETF_alpha	228	310	3.00E-34

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009055	molecular_function	electron transfer activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.260
	SRR3591706	second leaf	10.820
	SRR3591707	mature leaf	8.406
	SRR3591708	Shoot apex	22.142
	SRR3591709	Stem	7.345
	SRR3591710	White floral bud	9.326
	SRR3591711	White flower	12.599
	SRR3591712	Green floral bud	7.605
	SRR3591713	Yellow flower	7.868
SRP173429	SRR8316895	Juvenile bud stage	4.002
	SRR8316896	Juvenile bud stage	13.822
	SRR8316897	Juvenile bud stage	2.386
	SRR8316894	Third green stage	1.971
	SRR8316900	Third green stage	6.425
	SRR8316901	Third green stage	6.578
	SRR8316898	Complete white stage	2.733
	SRR8316899	Complete white stage	8.887
	SRR8316903	Complete white stage	4.910
	SRR8316902	Silver flowering stage	4.768
	SRR8316904	Silver flowering stage	4.521
	SRR8316905	Silver flowering stage	3.473
	SRR8316906	Gold flowering stage	10.795
	SRR8316907	Gold flowering stage	9.274
	SRR8316908	Gold flowering stage	9.762
SRP132670	SRR6706286	Control	13.475
	SRR6706287	Light intensity 50%	9.939
	SRR6706288	Light intensity 20%	9.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.204
	CNS0095593	Slightly white alabastrum(diploid) 2	3.007
	CNS0095594	Slightly white alabastrum(diploid) 3	3.194
	CNS0095595	Whole white alabastrum(diploid) 2	3.295
	CNS0095596	Whole white alabastrum(diploid) 3	3.701
	CNS0095597	Whole white alabastrum(diploid) 4	3.434
	CNS0095598	Silvery flower (diploied) 1	4.684
	CNS0095599	Silvery flower (diploied) 2	8.653
	CNS0095600	Silvery flower (diploied) 3	15.241
	CNS0095601	Golden flower (diploid) 1	16.004
	CNS0095602	Golden flower (diploid) 2	19.879
	CNS0095603	Golden flower (diploid) 3	17.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.887
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.087
	CNS0095610	Silvery flower (tetraploid) 1	12.595
	CNS0095611	Silvery flower (tetraploid) 2	15.514
	CNS0095612	Silvery flower (tetraploid) 3	4.272
	CNS0095613	Golden flower (tetraploid) 1	5.499
	CNS0095614	Golden flower (tetraploid) 2	10.201
	CNS0095615	Golden flower (tetraploid) 3	7.144
CRA001975	CRR073297	Stem 1	9.182
	CRR073298	Stem 2	11.838
	CRR073299	Stem 3	9.932
	CRR073300	Leaf 1	8.204
	CRR073301	Leaf 2	9.533
	CRR073302	Leaf 3	8.091
	CRR073303	Juvenile bud 1	8.973
	CRR073304	Juvenile bud 2	5.901
	CRR073305	Juvenile bud 3	7.622
	CRR073306	Third green 1	7.378
	CRR073307	Third green 2	4.758
	CRR073308	Third green 3	5.780
	CRR073309	Second white 1	7.572
	CRR073310	Second white 2	10.005
	CRR073311	Second white 3	9.345
	CRR073312	Silver flowering 1	5.940
	CRR073313	Silver flowering 2	8.145
	CRR073314	Silver flowering 3	6.824
	CRR073315	Gold flowering 1	4.200
	CRR073316	Gold flowering 2	4.756
	CRR073317	Gold flowering 3	5.115
	CRR073318	Tawny withering 1	16.192
	CRR073319	Tawny withering 2	9.653
	CRR073320	Tawny withering 3	12.948