Gene detail

Detail information of GWHGAAZE002050

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006473680.1	1.02511E-27	PREDICTED: uncharacterized protein LOC102610259 [Citrus sinensis]
trEMBL	tr\|A0A067H1V5\|A0A067H1V5_CITSI	4E-28	Uncharacterized protein {ECO:0000313\|EMBL:KDO84900.1}
TAIR10	AT1G47278.2	1E-15	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68055826	68056550	-
GWHAAZE00000001	mRNA	68055826	68056550	-
GWHAAZE00000001	exon	68056446	68056550	-
GWHAAZE00000001	exon	68055826	68056336	-
GWHAAZE00000001	CDS	68056446	68056550	-
GWHAAZE00000001	CDS	68056265	68056336	-
GWHAAZE00000001	three_prime_UTR	68055826	68056264	-

Transcript Sequence
>GWHTAAZE002054 ATGAAGGAAACGATAACATTTCTTAATTGCTTGGCACTAAACCACAATAACGACGAGAAGTGTGCTCGCCAAAAGGATCTTTTGAATGCCTGTATGGATGCTCAGACGGGCAAAAGCAGAAAGCCATGGGGAAGCATTAACTATCACTTGCAGAGGCTTAACAAGGGAAGAAAGTAAAAGTTTCTGATTGTTTTGCAATAATTTTAGGAACAGATTGTCCCTGTGTCTTAACAGATTTCGAGGTATTCATTGTCTGAAGGCATTGTGCTATTTGTGTGGATTAAAGTTTTTTTTTTTTGACATTTTGTGGTCTATTATCAAATTGATATGATCTTTCCGATGTTTATCGGATGATTAAACTCGTTAAGGTCTGGCTGTTGGAGTTCTATTTCTACATATCTCCATCGAAGGTCATCTTATCTGGTAGAGGATCAACAAGTGTGGCAATTAGAGAAATAAATATGGACTCCACTCTTATATTCTAATTGCCATTACATTAGGCAATTAGAGGAATAATTTTTACCAACAATGATTATGGGACTGAAGTTTAAAAACGAACGTGGGTTAAGGCTATTTGATCCTAAGAGTAAACAGCAAACACGCCGTCACAACTCAA

Network for GWHGAAZE002050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15663.6	zf-CCCH_3	30	85	1.10E-10
PF14608.7	zf-CCCH_2	124	144	0.00026
PF14608.7	zf-CCCH_2	706	725	0.0061
PF14608.7	zf-CCCH_2	765	785	0.0023

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.380
	SRR3591706	second leaf	4.643
	SRR3591707	mature leaf	5.056
	SRR3591708	Shoot apex	11.740
	SRR3591709	Stem	6.291
	SRR3591710	White floral bud	15.200
	SRR3591711	White flower	16.412
	SRR3591712	Green floral bud	28.593
	SRR3591713	Yellow flower	14.822
SRP173429	SRR8316895	Juvenile bud stage	11.921
	SRR8316896	Juvenile bud stage	16.018
	SRR8316897	Juvenile bud stage	10.666
	SRR8316894	Third green stage	5.641
	SRR8316900	Third green stage	26.939
	SRR8316901	Third green stage	29.218
	SRR8316898	Complete white stage	8.674
	SRR8316899	Complete white stage	26.782
	SRR8316903	Complete white stage	10.738
	SRR8316902	Silver flowering stage	6.782
	SRR8316904	Silver flowering stage	6.072
	SRR8316905	Silver flowering stage	5.142
	SRR8316906	Gold flowering stage	7.969
	SRR8316907	Gold flowering stage	8.904
	SRR8316908	Gold flowering stage	14.835
SRP132670	SRR6706286	Control	18.865
	SRR6706287	Light intensity 50%	19.198
	SRR6706288	Light intensity 20%	21.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.556
	CNS0095593	Slightly white alabastrum(diploid) 2	33.946
	CNS0095594	Slightly white alabastrum(diploid) 3	32.461
	CNS0095595	Whole white alabastrum(diploid) 2	35.646
	CNS0095596	Whole white alabastrum(diploid) 3	46.323
	CNS0095597	Whole white alabastrum(diploid) 4	28.527
	CNS0095598	Silvery flower (diploied) 1	20.050
	CNS0095599	Silvery flower (diploied) 2	21.745
	CNS0095600	Silvery flower (diploied) 3	21.896
	CNS0095601	Golden flower (diploid) 1	22.037
	CNS0095602	Golden flower (diploid) 2	20.729
	CNS0095603	Golden flower (diploid) 3	17.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.460
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.884
	CNS0095610	Silvery flower (tetraploid) 1	19.242
	CNS0095611	Silvery flower (tetraploid) 2	19.241
	CNS0095612	Silvery flower (tetraploid) 3	15.099
	CNS0095613	Golden flower (tetraploid) 1	19.593
	CNS0095614	Golden flower (tetraploid) 2	20.138
	CNS0095615	Golden flower (tetraploid) 3	12.087
CRA001975	CRR073297	Stem 1	16.132
	CRR073298	Stem 2	15.987
	CRR073299	Stem 3	18.694
	CRR073300	Leaf 1	18.219
	CRR073301	Leaf 2	19.100
	CRR073302	Leaf 3	25.667
	CRR073303	Juvenile bud 1	21.322
	CRR073304	Juvenile bud 2	18.252
	CRR073305	Juvenile bud 3	19.705
	CRR073306	Third green 1	6.010
	CRR073307	Third green 2	6.366
	CRR073308	Third green 3	7.373
	CRR073309	Second white 1	10.525
	CRR073310	Second white 2	7.172
	CRR073311	Second white 3	5.181
	CRR073312	Silver flowering 1	3.797
	CRR073313	Silver flowering 2	6.867
	CRR073314	Silver flowering 3	3.447
	CRR073315	Gold flowering 1	12.876
	CRR073316	Gold flowering 2	8.802
	CRR073317	Gold flowering 3	10.918
	CRR073318	Tawny withering 1	14.453
	CRR073319	Tawny withering 2	17.118
	CRR073320	Tawny withering 3	11.379