Gene detail

Detail information of GWHGAAZE002045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW89656.1	1.88544E-40	hypothetical protein EUGRSUZ_A01927 [Eucalyptus grandis]
COG	YP_064353.1	4E-15	aromatic amino acid aminotransferase
Swissprot	tr\|P46643\|AAT1_ARATH	2E-37	Aspartate aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|A0A059DGW6\|A0A059DGW6_EUCGR	7E-41	Aspartate aminotransferase {ECO:0000256\|RuleBase:RU000480}
TAIR10	AT2G30970.2	8E-32	aspartate aminotransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67805831	67806846	+
GWHAAZE00000001	mRNA	67805831	67806846	+
GWHAAZE00000001	exon	67805831	67806004	+
GWHAAZE00000001	exon	67806757	67806846	+
GWHAAZE00000001	CDS	67805831	67806004	+
GWHAAZE00000001	CDS	67806757	67806846	+

Transcript Sequence
>GWHTAAZE002049 ATGGCACTTCGAGCCTCAGTTTCCAAGCGAATCTTCGGCTCCGGCTCCACATACGGAGTTCGATCCGTTTCCTCGTGGTGGAAGAACGTGGAGCCTGCACCAAAGGATCCAATTCTCGGCGTTACTGAAGCTTTTCTCGCCGATCCCGACCCCACTAAAGTCAATGTCGGAGTTGGTGCTTATCGTGACGATAATGGACAGCCGGTTGTTCTCGGGTGCGTCAGAGAAGCAGAACGGCGGATCGCCGGAAATTTGAACATGTGA

Network for GWHGAAZE002045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	899	1189	7.30E-66

Protein Sequence

>GWHPAAZE018181
MVFKGRFFSSKKSDTSSPEGSNSPRSFGSNSPIRSEKKKVKSNSKEDQRSTSPSPSLSGFTSSCRQTQVKDSSKQLLSQQQKKKDKDEKKDVKGKETKINNQTPSPVKHSVESSSPSSSKTRKGAEVPASVSPILASSLGLNRIKTRSGPLPQESFFGFGRDKGSSLGASNLSKPVGDGGSGLGKSSNKKEVVDLKKPGVMENVRVGSWADNRINSDSMSTETVPSIDHSPLVQARSCLQNGESSSSEAGRLNSSRKHSGGLKSSELCTPELKASYDCENPKESESPRFQAILRVTSAPRKRFPSDIKSFSHELNSKGEVLSMIRAKFDKAKEEVDSDLHIFAADLVGILDKNAENHPEWQETIEDLLVLARSCAMTSPGEFWLQCEGIVQELDDRRQELPMGILKQLHTRMLFILTRCTRLLQFHKESGLSEDEQFLQLRQSLHSAEQRAPSGMMGRDVKSSSAAKAASKSTSVRKSYSQEQHSLEWRKDRVIKPANFLSPPVVVETPTNVDSPGGRDRMASWKKFPSPGGKSPKESSPAKEEQNDGKVENLKMLNKGRTIISDIDMVPVKPPEVPPAKDSHGHSSSIPSKHQHKVSWGYWSDQPNISDVESSIICRICEEEVPTLHVEDHSRICAIANRCDQKGLSVDERLVRIGETLEKLMESFSQKEFQHGVGSPDGGAKVSNSSVTEESDLLSPKLSDWSRRGSEDMLDCFPEADNSVFMDDIKGLPSMSCRTRFGPKSEQGMTTSSGGSMTPRSPLLTPRTSQIDLLLAGKGAYSEHDDLPQMNELADIARCASNTPLDDDRSLSYLLSCLEDLRVVIERRKLDALTVETFGARIEKLIREKYLQLCEMVDDDKIDITSTVIDEDAPLEDDVVRSLRTSPIHNNKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHLKLTDFGLSKVGLINSTDDLSGPAVSGTSLLGEEDESQSSVSENNEERRKKRSAVGTPDYLAPEILLGTGHGTSADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRNIPWPRVPEEMSPDAEDLIDRLLTEDPNQRLGARGASEVKQHPFFRDINWDTLARQKAAFVPASESALDTSYFTSRFTWNPSDEHVYAGSDFEDSSDNGSMSGSSSCLSNRHDEVVDECAGLAEFDPGSSINYSFSNFSFKEALSLPKLYGLFAKAMNLSQLATINYDLLTKGWKDDQPPDHDT

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_MAST

KEGG pathway

KO	Enzyme	pathway	mapID
K14455	GOT2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Carbon fixation in photosynthetic organisms	map00710
		Alanine, aspartate and glutamate metabolism	map00250
		Cysteine and methionine metabolism	map00270
		Arginine biosynthesis	map00220
		Arginine and proline metabolism	map00330
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
		Fat digestion and absorption	map04975

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.770
	SRR3591706	second leaf	50.108
	SRR3591707	mature leaf	25.966
	SRR3591708	Shoot apex	21.825
	SRR3591709	Stem	25.323
	SRR3591710	White floral bud	43.910
	SRR3591711	White flower	68.613
	SRR3591712	Green floral bud	49.732
	SRR3591713	Yellow flower	123.968
SRP173429	SRR8316895	Juvenile bud stage	17.492
	SRR8316896	Juvenile bud stage	23.823
	SRR8316897	Juvenile bud stage	9.461
	SRR8316894	Third green stage	16.641
	SRR8316900	Third green stage	68.977
	SRR8316901	Third green stage	48.974
	SRR8316898	Complete white stage	44.216
	SRR8316899	Complete white stage	57.809
	SRR8316903	Complete white stage	49.524
	SRR8316902	Silver flowering stage	45.754
	SRR8316904	Silver flowering stage	71.443
	SRR8316905	Silver flowering stage	44.433
	SRR8316906	Gold flowering stage	221.991
	SRR8316907	Gold flowering stage	200.505
	SRR8316908	Gold flowering stage	174.513
SRP132670	SRR6706286	Control	103.046
	SRR6706287	Light intensity 50%	114.713
	SRR6706288	Light intensity 20%	125.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.848
	CNS0095593	Slightly white alabastrum(diploid) 2	22.363
	CNS0095594	Slightly white alabastrum(diploid) 3	14.272
	CNS0095595	Whole white alabastrum(diploid) 2	16.608
	CNS0095596	Whole white alabastrum(diploid) 3	12.560
	CNS0095597	Whole white alabastrum(diploid) 4	18.979
	CNS0095598	Silvery flower (diploied) 1	18.009
	CNS0095599	Silvery flower (diploied) 2	21.801
	CNS0095600	Silvery flower (diploied) 3	134.083
	CNS0095601	Golden flower (diploid) 1	30.500
	CNS0095602	Golden flower (diploid) 2	141.021
	CNS0095603	Golden flower (diploid) 3	138.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.222
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.772
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.620
	CNS0095610	Silvery flower (tetraploid) 1	83.231
	CNS0095611	Silvery flower (tetraploid) 2	95.144
	CNS0095612	Silvery flower (tetraploid) 3	122.375
	CNS0095613	Golden flower (tetraploid) 1	57.108
	CNS0095614	Golden flower (tetraploid) 2	81.973
	CNS0095615	Golden flower (tetraploid) 3	51.216
CRA001975	CRR073297	Stem 1	38.915
	CRR073298	Stem 2	35.406
	CRR073299	Stem 3	49.037
	CRR073300	Leaf 1	93.493
	CRR073301	Leaf 2	87.417
	CRR073302	Leaf 3	113.664
	CRR073303	Juvenile bud 1	168.308
	CRR073304	Juvenile bud 2	223.710
	CRR073305	Juvenile bud 3	145.198
	CRR073306	Third green 1	112.097
	CRR073307	Third green 2	71.253
	CRR073308	Third green 3	83.439
	CRR073309	Second white 1	289.738
	CRR073310	Second white 2	211.506
	CRR073311	Second white 3	199.876
	CRR073312	Silver flowering 1	218.496
	CRR073313	Silver flowering 2	244.840
	CRR073314	Silver flowering 3	234.985
	CRR073315	Gold flowering 1	22.556
	CRR073316	Gold flowering 2	20.500
	CRR073317	Gold flowering 3	16.976
	CRR073318	Tawny withering 1	38.931
	CRR073319	Tawny withering 2	45.819
	CRR073320	Tawny withering 3	18.022