Detail information of GWHGAAZE002040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008449186.10PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491136 [Cucumis melo]
COGYP_003148385.15E-97cell wall-binding protein
Swissprottr|F4JXC5|SBT54_ARATH0Subtilisin-like protease SBT5.4 {ECO:0000303|PubMed:16193095} (Precursor)
trEMBLtr|A0A059CB72|A0A059CB72_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW75459.1}
TAIR10AT5G59810.10Subtilase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6771649667728221-
GWHAAZE00000001mRNA6771649667728221-
GWHAAZE00000001exon6772765067728221-
GWHAAZE00000001exon6772741067727537-
GWHAAZE00000001exon6772666467726864-
GWHAAZE00000001exon6772404467724585-
GWHAAZE00000001exon6771980667719915-
GWHAAZE00000001exon6771962967719726-
GWHAAZE00000001exon6771936767719531-
GWHAAZE00000001exon6771910767719209-
GWHAAZE00000001exon6771818467718828-
GWHAAZE00000001exon6771782067718071-
GWHAAZE00000001exon6771757567717689-
GWHAAZE00000001exon6771723367717446-
GWHAAZE00000001exon6771677967717139-
GWHAAZE00000001exon6771649667716526-
GWHAAZE00000001CDS6772765067728221-
GWHAAZE00000001CDS6772741067727537-
GWHAAZE00000001CDS6772666467726864-
GWHAAZE00000001CDS6772404467724585-
GWHAAZE00000001CDS6771980667719915-
GWHAAZE00000001CDS6771962967719726-
GWHAAZE00000001CDS6771936767719531-
GWHAAZE00000001CDS6771910767719209-
GWHAAZE00000001CDS6771818467718828-
GWHAAZE00000001CDS6771782067718071-
GWHAAZE00000001CDS6771757567717689-
GWHAAZE00000001CDS6771723367717446-
GWHAAZE00000001CDS6771677967717139-
GWHAAZE00000001CDS6771649667716526-
Transcript Sequence

Network for GWHGAAZE002040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00082.23Peptidase_S823272.80E-30
PF17766.2fn3_63914951.40E-16
PF05922.17Inhibitor_I94825666.70E-15
PF00082.23Peptidase_S859510551.10E-40
PF02225.23PA8609294.30E-07
PF03352.14Adenine_glyco1493217.30E-63
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01246tag Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006508biological_processproteolysis
GO:0003824molecular_functioncatalytic activity
GO:0008725molecular_functionDNA-3-methyladenine glycosylase activity
GO:0004252molecular_functionserine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.008
SRR3591706second leaf0.026
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.350
SRR3591709Stem0.031
SRR3591710White floral bud0.582
SRR3591711White flower0.639
SRR3591712Green floral bud0.493
SRR3591713Yellow flower0.569
SRP173429 SRR8316895Juvenile bud stage 0.074
SRR8316896Juvenile bud stage 0.110
SRR8316897Juvenile bud stage 0.030
SRR8316894Third green stage 0.013
SRR8316900Third green stage 0.021
SRR8316901Third green stage 0.018
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.017
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.019
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.067
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.004
SRR6706288Light intensity 20%0.006
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.617
CNS0095593Slightly white alabastrum(diploid) 20.067
CNS0095594Slightly white alabastrum(diploid) 30.108
CNS0095595Whole white alabastrum(diploid) 20.021
CNS0095596Whole white alabastrum(diploid) 30.011
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.010
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.020
CNS0095603Golden flower (diploid) 30.014
CNS0095604Slightly white alabastrum(tetraploid) 10.116
CNS0095605Slightly white alabastrum(tetraploid) 20.066
CNS0095606Slightly white alabastrum(tetraploid) 30.089
CNS0095607Whole white alabastrum(tetraploid) 10.007
CNS0095608Whole white alabastrum(tetraploid) 20.006
CNS0095609Whole white alabastrum(tetraploid) 30.002
CNS0095610Silvery flower (tetraploid) 10.047
CNS0095611Silvery flower (tetraploid) 20.022
CNS0095612Silvery flower (tetraploid) 30.016
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.057
CNS0095615Golden flower (tetraploid) 30.010
CRA001975CRR073297Stem 10.563
CRR073298Stem 20.637
CRR073299Stem 30.888
CRR073300Leaf 10.000
CRR073301Leaf 20.016
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.003
CRR073304Juvenile bud 20.001
CRR073305Juvenile bud 30.000
CRR073306Third green 10.012
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.014
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.001
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.010
CRR073317Gold flowering 30.022
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.003