Gene detail

Detail information of GWHGAAZE002034

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010102131.1	2.56913E-80	Protein Mpv17 [Morus notabilis]
trEMBL	tr\|W9RQG4\|W9RQG4_9ROSA	1E-80	Protein Mpv17 {ECO:0000313\|EMBL:EXB92381.1}
TAIR10	AT2G42770.1	3E-63	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67507950	67517386	+
GWHAAZE00000001	mRNA	67507950	67517386	+
GWHAAZE00000001	exon	67507950	67508243	+
GWHAAZE00000001	exon	67509224	67509305	+
GWHAAZE00000001	exon	67509550	67509621	+
GWHAAZE00000001	exon	67512134	67512207	+
GWHAAZE00000001	exon	67513536	67513679	+
GWHAAZE00000001	exon	67513766	67513898	+
GWHAAZE00000001	exon	67516781	67516820	+
GWHAAZE00000001	exon	67517299	67517386	+
GWHAAZE00000001	CDS	67507950	67508243	+
GWHAAZE00000001	CDS	67509224	67509305	+
GWHAAZE00000001	CDS	67509550	67509621	+
GWHAAZE00000001	CDS	67512134	67512207	+
GWHAAZE00000001	CDS	67513536	67513679	+
GWHAAZE00000001	CDS	67513766	67513898	+
GWHAAZE00000001	CDS	67516781	67516820	+
GWHAAZE00000001	CDS	67517299	67517386	+

Transcript Sequence
>GWHTAAZE002038 ATGAGCTCATCACTTGGGGCGAGTGGATGGGGCAATGGCGGGATTTGGGGAGAGCGGCCATTTCGCTCTCATCGTCAAAGAAAGACCAGAACTAATAAATCTTCTTCTTCTTCCAAGCCCTCAAACTCGCCGGAGTCAACCGGAGGAGGAGGAGCCGGTCACCGGTTCCCCCTCAAGCAAGCTGTGACGGCCGGCTCTCTCGCTCTCACTGGAGATACTATTGCTCAACTCCGAGGCCGGTGGGTGAAGAACAAATCTGTCGAACAAACCTCTAATTTCGATGATTTCTTCAAGTTTAGCTTGTTTGAGAGCTACAGTTTGGTTTTGCAAAACAGAACTGCTGCACCATTCTCAGTTTCTGGTGAAATGAAGCAAGTCAGACACGATGGTGGTGGTGGGAAGGTGGGCAACAAAGCCCCACAATTTTCCTACTACAAAGGCAAAGCTTTTCTTATGAAATTTTCTAGAGTCAATGAGGTCTCTGCGGCTCTAGATGAACACATGAACACATGCCCATTGACGAACCTACTTTCAGACTACAACTGGCTTCGAGCTCTCCGAATGACTTCATATGGTTTTCTTTTATATGGTCCTGGTTCTTATGCTTGGTACCAGTTTCTTGATCATTGCATGCCAAAACAATCAGTACCGAACGTGTTGACAAAGGTTTTATTAAACCAAATTGTGCTCGGTCCATGCGTAATTGCTGTTGTTTTTGCATGGAATAATTTATGGCAAGGGAAGCTAGCAGAGCTTCCAGATAAGTACCAGAAAGATGCTCTTCCCACATTGCTTTTCGGGTTTAGGTTCTGGATCCCTGTCAGCATATTGAACTTTTGGGTGGTTCCTCTACAAGCTCGAGTTGCTTTCATGTCAATGGGCTCTATATTCTGGAACTTCTGCTTGTCTTCCTCTATGAGCAAGTAA

Network for GWHGAAZE002034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04117.13	Mpv17_PMP22	246	303	1.10E-13
PF13855.7	LRR_8	35	93	2.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13348	MPV17	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.654
	SRR3591706	second leaf	71.361
	SRR3591707	mature leaf	39.775
	SRR3591708	Shoot apex	64.899
	SRR3591709	Stem	15.878
	SRR3591710	White floral bud	16.279
	SRR3591711	White flower	4.547
	SRR3591712	Green floral bud	29.285
	SRR3591713	Yellow flower	7.232
SRP173429	SRR8316895	Juvenile bud stage	20.916
	SRR8316896	Juvenile bud stage	24.426
	SRR8316897	Juvenile bud stage	18.153
	SRR8316894	Third green stage	11.363
	SRR8316900	Third green stage	39.249
	SRR8316901	Third green stage	36.206
	SRR8316898	Complete white stage	9.911
	SRR8316899	Complete white stage	35.220
	SRR8316903	Complete white stage	9.883
	SRR8316902	Silver flowering stage	4.137
	SRR8316904	Silver flowering stage	5.291
	SRR8316905	Silver flowering stage	2.750
	SRR8316906	Gold flowering stage	9.621
	SRR8316907	Gold flowering stage	8.035
	SRR8316908	Gold flowering stage	9.327
SRP132670	SRR6706286	Control	15.459
	SRR6706287	Light intensity 50%	15.327
	SRR6706288	Light intensity 20%	17.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.341
	CNS0095593	Slightly white alabastrum(diploid) 2	18.493
	CNS0095594	Slightly white alabastrum(diploid) 3	20.899
	CNS0095595	Whole white alabastrum(diploid) 2	23.293
	CNS0095596	Whole white alabastrum(diploid) 3	28.104
	CNS0095597	Whole white alabastrum(diploid) 4	22.887
	CNS0095598	Silvery flower (diploied) 1	9.464
	CNS0095599	Silvery flower (diploied) 2	12.932
	CNS0095600	Silvery flower (diploied) 3	7.878
	CNS0095601	Golden flower (diploid) 1	11.550
	CNS0095602	Golden flower (diploid) 2	7.953
	CNS0095603	Golden flower (diploid) 3	7.506
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.192
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.153
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.163
	CNS0095610	Silvery flower (tetraploid) 1	9.169
	CNS0095611	Silvery flower (tetraploid) 2	14.157
	CNS0095612	Silvery flower (tetraploid) 3	9.988
	CNS0095613	Golden flower (tetraploid) 1	6.551
	CNS0095614	Golden flower (tetraploid) 2	7.804
	CNS0095615	Golden flower (tetraploid) 3	6.861
CRA001975	CRR073297	Stem 1	27.059
	CRR073298	Stem 2	24.252
	CRR073299	Stem 3	25.299
	CRR073300	Leaf 1	28.173
	CRR073301	Leaf 2	25.253
	CRR073302	Leaf 3	34.988
	CRR073303	Juvenile bud 1	31.071
	CRR073304	Juvenile bud 2	32.590
	CRR073305	Juvenile bud 3	21.305
	CRR073306	Third green 1	10.836
	CRR073307	Third green 2	6.708
	CRR073308	Third green 3	8.341
	CRR073309	Second white 1	12.490
	CRR073310	Second white 2	6.641
	CRR073311	Second white 3	4.015
	CRR073312	Silver flowering 1	8.130
	CRR073313	Silver flowering 2	7.258
	CRR073314	Silver flowering 3	4.971
	CRR073315	Gold flowering 1	36.855
	CRR073316	Gold flowering 2	40.965
	CRR073317	Gold flowering 3	30.582
	CRR073318	Tawny withering 1	13.964
	CRR073319	Tawny withering 2	15.882
	CRR073320	Tawny withering 3	10.951