Gene detail

Detail information of GWHGAAZE002032

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266761.1	2.3945E-116	PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B isoform X1 [Vitis vinifera]
COG	YP_002763101.1	2E-42	putative oxidoreductase
Swissprot	tr\|P0DKC6\|HSD1B_ARATH	2E-95	11-beta-hydroxysteroid dehydrogenase 1B
trEMBL	tr\|D7U5Y1\|D7U5Y1_VITVI	1E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38150.3}
TAIR10	AT5G50700.1	2E-71	hydroxysteroid dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67482458	67484527	+
GWHAAZE00000001	mRNA	67482458	67484527	+
GWHAAZE00000001	exon	67482458	67482661	+
GWHAAZE00000001	exon	67482805	67482997	+
GWHAAZE00000001	exon	67483325	67483404	+
GWHAAZE00000001	exon	67483569	67483689	+
GWHAAZE00000001	exon	67483789	67483946	+
GWHAAZE00000001	exon	67484333	67484527	+
GWHAAZE00000001	CDS	67482458	67482661	+
GWHAAZE00000001	CDS	67482805	67482997	+
GWHAAZE00000001	CDS	67483325	67483404	+
GWHAAZE00000001	CDS	67483569	67483689	+
GWHAAZE00000001	CDS	67483789	67483946	+
GWHAAZE00000001	CDS	67484333	67484527	+

Transcript Sequence
>GWHTAAZE002036 ATGTACAAGGAGTATATGAACAACAGGTTGAGTAACGTAGCGATTATGTATGTTATTTTCACAGTCCTGTGTTTAATATTACCGCCTTTCTTTATCTTCAAATCCATATATCCCCTCATAAATAGCTTCTTCTGCTCCACCCACAACAAGGACCTCAAAGGAAAAGTTGTCCTAATCACTGGTGCTTCCTCTGGAATTGGAGAGTATTTGGCATATGAGTATGCAAAGGAAGGAGCATGTTTGGTACTAGTGGCAAGAAGGGAAGGGAAGCTGGGTGAGGTAGCAGAGAAGGCGAGAGGGCTTGGATCTCCTCAAGTACTTGTTGTCTGTGGTGATGTCTCTAACATTAATGACTGTAAGAGGTTTATCGATCAAACCATTGACCACTTTGGCCGATTGGATCATCTGGTTAATAATGCTGGGATTGGTGGCTATAACTCAATTGACGTAGATGTTACCAAATTTGAACCTATGATGGACATAAACTTTTGGGGATCAGTTTACCCGACACACTTTGCAATACCACACCTGAAAAAGAGCAAGGGTAATATTGTGGTCAACTCTTCCTCTGCTGCTCTCTTGCACCCTCCTTCAGCAGCAGCATTGATAAGCTTCTATGAAGCAATGAGAGTAGAATTAGCTCCCCAGGGTGTTAGAGTAACAATAGTGACGCTGGGCTTCATTGATTCGGAGATGGTTAAAGGCAAGCACTTTACAAAGGAAGGTGATCTCCGAGTCAATACAATACATGGAGATGCTATTGCAAATGCATTTCCAGTAATGAGTACAGAGCCATGTGCAAAGGCAATATTGGAAGGGACATGCAAAGGGGAAAGATACATAAGTGAACCACAGATTGTCAGGGTGCTCCTCCTCCTCAAGTTTTTATGCCCCGAGTTGACTGATTTCTACTACACTAAGCTTTACCCCAGCTTTCTCATTAGTAATTAA

Network for GWHGAAZE002032

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	55	235	1.20E-41
PF16363.6	GDP_Man_Dehyd	6	329	1.90E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01784	galE, GALE	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006012	biological_process	galactose metabolic process
GO:0003978	molecular_function	UDP-glucose 4-epimerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.179
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.223
	SRR3591709	Stem	0.087
	SRR3591710	White floral bud	33.701
	SRR3591711	White flower	10.267
	SRR3591712	Green floral bud	40.339
	SRR3591713	Yellow flower	9.126
SRP173429	SRR8316895	Juvenile bud stage	5.646
	SRR8316896	Juvenile bud stage	14.503
	SRR8316897	Juvenile bud stage	10.148
	SRR8316894	Third green stage	7.024
	SRR8316900	Third green stage	28.075
	SRR8316901	Third green stage	15.758
	SRR8316898	Complete white stage	4.747
	SRR8316899	Complete white stage	12.689
	SRR8316903	Complete white stage	9.017
	SRR8316902	Silver flowering stage	2.061
	SRR8316904	Silver flowering stage	9.191
	SRR8316905	Silver flowering stage	0.492
	SRR8316906	Gold flowering stage	0.392
	SRR8316907	Gold flowering stage	0.827
	SRR8316908	Gold flowering stage	2.565
SRP132670	SRR6706286	Control	12.161
	SRR6706287	Light intensity 50%	15.805
	SRR6706288	Light intensity 20%	14.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.950
	CNS0095593	Slightly white alabastrum(diploid) 2	6.335
	CNS0095594	Slightly white alabastrum(diploid) 3	16.249
	CNS0095595	Whole white alabastrum(diploid) 2	7.879
	CNS0095596	Whole white alabastrum(diploid) 3	8.914
	CNS0095597	Whole white alabastrum(diploid) 4	12.305
	CNS0095598	Silvery flower (diploied) 1	0.559
	CNS0095599	Silvery flower (diploied) 2	2.268
	CNS0095600	Silvery flower (diploied) 3	2.936
	CNS0095601	Golden flower (diploid) 1	1.003
	CNS0095602	Golden flower (diploid) 2	0.617
	CNS0095603	Golden flower (diploid) 3	0.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.976
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.979
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.245
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.268
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.894
	CNS0095610	Silvery flower (tetraploid) 1	12.454
	CNS0095611	Silvery flower (tetraploid) 2	4.663
	CNS0095612	Silvery flower (tetraploid) 3	7.680
	CNS0095613	Golden flower (tetraploid) 1	0.615
	CNS0095614	Golden flower (tetraploid) 2	13.612
	CNS0095615	Golden flower (tetraploid) 3	8.451
CRA001975	CRR073297	Stem 1	8.230
	CRR073298	Stem 2	10.958
	CRR073299	Stem 3	16.895
	CRR073300	Leaf 1	6.591
	CRR073301	Leaf 2	5.612
	CRR073302	Leaf 3	11.083
	CRR073303	Juvenile bud 1	3.352
	CRR073304	Juvenile bud 2	9.853
	CRR073305	Juvenile bud 3	8.542
	CRR073306	Third green 1	1.593
	CRR073307	Third green 2	2.582
	CRR073308	Third green 3	8.206
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	1.687
	CRR073311	Second white 3	0.421
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.358
	CRR073314	Silver flowering 3	0.718
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.086
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000