Gene detail

Detail information of GWHGAAZE002023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619158.1	4.42723E-53	PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	4E-20	F-box protein CPR30
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	2E-49	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	1E-19	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67326462	67327505	-
GWHAAZE00000001	mRNA	67326462	67327505	-
GWHAAZE00000001	exon	67326462	67327505	-
GWHAAZE00000001	CDS	67326462	67327505	-

Transcript Sequence
>GWHTAAZE002027 ATGGTTAGGCATTGCACTCAATTGAATCAATATTTGTGTAAAGAGCACTACTCTATACGGTGCGATAATGATACATTTGATGAGTTTGCTAAATTCGATTTCCCATTCATTAGCCAATGTTCGCACTTTAATCTGGTTGGTAGCTGCAATGGATTGGTATGTTTGTTTGATGATCATGGAACTAGAACATTCATAGTGTTATGGAACCCCTCTCTTAGAAAATCAGTGACCCTTCCGCAGCCCCGCGCTGTAACTAAGTCGCGTGGCCATTTCGGATTTGGAATTGACCCTGTAACCGGTGAATACAAGATTGTAGGGCTTGCGTATCCGTATACAGATAGGTTCCTAGAGGTAGAGCTATTCAACCTTAGCACGGGCTCTTGGCGAAGCATTAATGTCGGGGACTTTTCGTATGTTACTTCGCCTCATACTCAACAGGCCTTTTTGAATGGTGTTGTCCACTGGAGTGGGTATAGCAGTTACAAGGTTGGTGGTAGTATGCACAATCTGATAGTGTCATTCGACATGAGAAATGAGTCGCTAGGTGTTGTAGTGGTGCCACCTTGTGTACAACAATATTGGGACCACATTGCCATGCGTGTAACAATATTTGGAGAATGTCTTTCTTTTTTACATCCTGATGGAGATCATTCTTGGTGCCTATGGGTGATGAAGGAGTATGGCGTGGAAAGTTCTTGGACAAAGCAGTTCACTGTTGATGTGCAATTGGGTTTGGGTAGACCAACTTGCTTTAGAGAGAATGGTGATCTCTTAGTGGAGAGAAGAGATTGGTCATGCCGTGAAGTGGAGTTGGTTTCCTATAGTCCTAAAAGTAAACTAATCAAGCATCTTGAAATACGTGGAACGAGATGCTCGTTTTATGTGGATACTTACAAAGAGAGCCTTGTTTTAGTTAAGGGCTTAAATGAAGTCTTGGGGAGGAAGGAAACTTCTGCTGGTGCAGTTACTTGCCAGGGGACATCAGTTATGCCCAGAGAAGATGACGAGGTTAATGGGAAGAGGAAAAAAATGAAACTAAATTGA

Network for GWHGAAZE002023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	148	248	4.40E-08
PF03006.21	HlyIII	80	400	9.20E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07297	ADIPOR	AMPK signaling pathway	map04152
		Adipocytokine signaling pathway	map04920
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.180
	SRR3591706	second leaf	0.582
	SRR3591707	mature leaf	1.208
	SRR3591708	Shoot apex	0.815
	SRR3591709	Stem	0.354
	SRR3591710	White floral bud	0.212
	SRR3591711	White flower	0.343
	SRR3591712	Green floral bud	0.677
	SRR3591713	Yellow flower	0.064
SRP173429	SRR8316895	Juvenile bud stage	0.615
	SRR8316896	Juvenile bud stage	0.752
	SRR8316897	Juvenile bud stage	0.144
	SRR8316894	Third green stage	0.296
	SRR8316900	Third green stage	0.774
	SRR8316901	Third green stage	0.459
	SRR8316898	Complete white stage	0.157
	SRR8316899	Complete white stage	1.073
	SRR8316903	Complete white stage	0.124
	SRR8316902	Silver flowering stage	0.102
	SRR8316904	Silver flowering stage	0.189
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.417
	SRR8316907	Gold flowering stage	0.487
	SRR8316908	Gold flowering stage	0.367
SRP132670	SRR6706286	Control	0.575
	SRR6706287	Light intensity 50%	0.601
	SRR6706288	Light intensity 20%	0.734
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.338
	CNS0095593	Slightly white alabastrum(diploid) 2	0.278
	CNS0095594	Slightly white alabastrum(diploid) 3	0.774
	CNS0095595	Whole white alabastrum(diploid) 2	0.940
	CNS0095596	Whole white alabastrum(diploid) 3	1.154
	CNS0095597	Whole white alabastrum(diploid) 4	0.510
	CNS0095598	Silvery flower (diploied) 1	0.150
	CNS0095599	Silvery flower (diploied) 2	0.322
	CNS0095600	Silvery flower (diploied) 3	0.736
	CNS0095601	Golden flower (diploid) 1	0.285
	CNS0095602	Golden flower (diploid) 2	0.889
	CNS0095603	Golden flower (diploid) 3	0.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.336
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.616
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.998
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.897
	CNS0095610	Silvery flower (tetraploid) 1	1.489
	CNS0095611	Silvery flower (tetraploid) 2	1.652
	CNS0095612	Silvery flower (tetraploid) 3	0.879
	CNS0095613	Golden flower (tetraploid) 1	0.983
	CNS0095614	Golden flower (tetraploid) 2	0.892
	CNS0095615	Golden flower (tetraploid) 3	0.638
CRA001975	CRR073297	Stem 1	0.423
	CRR073298	Stem 2	0.990
	CRR073299	Stem 3	0.498
	CRR073300	Leaf 1	0.440
	CRR073301	Leaf 2	0.405
	CRR073302	Leaf 3	0.582
	CRR073303	Juvenile bud 1	0.575
	CRR073304	Juvenile bud 2	0.229
	CRR073305	Juvenile bud 3	0.450
	CRR073306	Third green 1	0.289
	CRR073307	Third green 2	0.918
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.195
	CRR073310	Second white 2	0.293
	CRR073311	Second white 3	0.271
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.411
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.651
	CRR073316	Gold flowering 2	1.298
	CRR073317	Gold flowering 3	0.389
	CRR073318	Tawny withering 1	0.770
	CRR073319	Tawny withering 2	0.891
	CRR073320	Tawny withering 3	0.060