Detail information of GWHGAAZE002022


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002298418.14.89636E-41hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
Swissprottr|Q8GXC7|FBK50_ARATH2E-11F-box/kelch-repeat protein At3g06240
trEMBLtr|B9GFB6|B9GFB6_POPTR2E-41Uncharacterized protein {ECO:0000313|EMBL:EEE83223.1}
TAIR10AT3G06240.12E-10F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6729240167293150-
GWHAAZE00000001mRNA6729240167293150-
GWHAAZE00000001exon6729240167293150-
GWHAAZE00000001CDS6729240167293150-
Transcript Sequence

Network for GWHGAAZE002022

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07734.14FBA_1661811.10E-09
PF00012.21HSP7014934.60E-206
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03283HSPA1s Spliceosome map03040
Protein processing in endoplasmic reticulummap04141
MAPK signaling pathwaymap04010
Endocytosismap04144
Antigen processing and presentationmap04612
Estrogen signaling pathwaymap04915
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.286
SRR3591706second leaf1.397
SRR3591707mature leaf1.507
SRR3591708Shoot apex2.327
SRR3591709Stem1.705
SRR3591710White floral bud0.245
SRR3591711White flower0.442
SRR3591712Green floral bud0.139
SRR3591713Yellow flower0.184
SRP173429 SRR8316895Juvenile bud stage 0.409
SRR8316896Juvenile bud stage 0.353
SRR8316897Juvenile bud stage 0.224
SRR8316894Third green stage 0.191
SRR8316900Third green stage 0.655
SRR8316901Third green stage 0.647
SRR8316898Complete white stage 0.576
SRR8316899Complete white stage 0.468
SRR8316903Complete white stage 1.071
SRR8316902Silver flowering stage0.971
SRR8316904Silver flowering stage1.260
SRR8316905Silver flowering stage0.815
SRR8316906Gold flowering stage 4.764
SRR8316907Gold flowering stage 2.832
SRR8316908Gold flowering stage 2.178
SRP132670SRR6706286Control0.803
SRR6706287Light intensity 50%0.596
SRR6706288Light intensity 20%0.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.291
CNS0095593Slightly white alabastrum(diploid) 20.618
CNS0095594Slightly white alabastrum(diploid) 30.456
CNS0095595Whole white alabastrum(diploid) 20.495
CNS0095596Whole white alabastrum(diploid) 30.540
CNS0095597Whole white alabastrum(diploid) 40.602
CNS0095598Silvery flower (diploied) 10.546
CNS0095599Silvery flower (diploied) 20.691
CNS0095600Silvery flower (diploied) 30.740
CNS0095601Golden flower (diploid) 10.666
CNS0095602Golden flower (diploid) 21.114
CNS0095603Golden flower (diploid) 30.960
CNS0095604Slightly white alabastrum(tetraploid) 11.376
CNS0095605Slightly white alabastrum(tetraploid) 21.348
CNS0095606Slightly white alabastrum(tetraploid) 32.503
CNS0095607Whole white alabastrum(tetraploid) 11.334
CNS0095608Whole white alabastrum(tetraploid) 21.295
CNS0095609Whole white alabastrum(tetraploid) 31.278
CNS0095610Silvery flower (tetraploid) 10.752
CNS0095611Silvery flower (tetraploid) 20.741
CNS0095612Silvery flower (tetraploid) 30.353
CNS0095613Golden flower (tetraploid) 10.848
CNS0095614Golden flower (tetraploid) 20.622
CNS0095615Golden flower (tetraploid) 30.295
CRA001975CRR073297Stem 10.614
CRR073298Stem 20.654
CRR073299Stem 30.146
CRR073300Leaf 10.927
CRR073301Leaf 20.207
CRR073302Leaf 30.152
CRR073303Juvenile bud 11.038
CRR073304Juvenile bud 20.181
CRR073305Juvenile bud 30.174
CRR073306Third green 10.360
CRR073307Third green 21.263
CRR073308Third green 31.099
CRR073309Second white 10.102
CRR073310Second white 20.903
CRR073311Second white 31.678
CRR073312Silver flowering 10.866
CRR073313Silver flowering 21.547
CRR073314Silver flowering 31.101
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.064
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.197
CRR073319Tawny withering 20.901
CRR073320Tawny withering 30.255