Detail information of GWHGAAZE002014


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006352955.11.87003E-63PREDICTED: F-box protein At3g07870-like [Solanum tuberosum]
Swissprottr|Q9SU30|CPR30_ARATH1E-23F-box protein CPR30
trEMBLtr|M1BWG5|M1BWG5_SOLTU7E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054509}
TAIR10AT4G12560.23E-21F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6717119567171965+
GWHAAZE00000001mRNA6717119567171965+
GWHAAZE00000001exon6717119567171965+
GWHAAZE00000001CDS6717119567171965+
Transcript Sequence

Network for GWHGAAZE002014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5431.40E-10
PF01535.21PPR1711993.80E-05
PF01535.21PPR2072320.22
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.968
SRR3591706second leaf1.870
SRR3591707mature leaf1.598
SRR3591708Shoot apex3.671
SRR3591709Stem2.325
SRR3591710White floral bud0.445
SRR3591711White flower0.275
SRR3591712Green floral bud0.354
SRR3591713Yellow flower0.081
SRP173429 SRR8316895Juvenile bud stage 1.096
SRR8316896Juvenile bud stage 1.769
SRR8316897Juvenile bud stage 0.596
SRR8316894Third green stage 0.568
SRR8316900Third green stage 1.589
SRR8316901Third green stage 1.141
SRR8316898Complete white stage 0.195
SRR8316899Complete white stage 1.504
SRR8316903Complete white stage 0.281
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.065
SRP132670SRR6706286Control2.414
SRR6706287Light intensity 50%2.321
SRR6706288Light intensity 20%2.055
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.016
CNS0095593Slightly white alabastrum(diploid) 21.540
CNS0095594Slightly white alabastrum(diploid) 30.587
CNS0095595Whole white alabastrum(diploid) 21.319
CNS0095596Whole white alabastrum(diploid) 30.762
CNS0095597Whole white alabastrum(diploid) 41.306
CNS0095598Silvery flower (diploied) 12.538
CNS0095599Silvery flower (diploied) 20.963
CNS0095600Silvery flower (diploied) 30.933
CNS0095601Golden flower (diploid) 11.150
CNS0095602Golden flower (diploid) 21.542
CNS0095603Golden flower (diploid) 31.477
CNS0095604Slightly white alabastrum(tetraploid) 12.945
CNS0095605Slightly white alabastrum(tetraploid) 21.938
CNS0095606Slightly white alabastrum(tetraploid) 33.900
CNS0095607Whole white alabastrum(tetraploid) 11.289
CNS0095608Whole white alabastrum(tetraploid) 20.582
CNS0095609Whole white alabastrum(tetraploid) 33.242
CNS0095610Silvery flower (tetraploid) 10.597
CNS0095611Silvery flower (tetraploid) 21.808
CNS0095612Silvery flower (tetraploid) 30.438
CNS0095613Golden flower (tetraploid) 10.180
CNS0095614Golden flower (tetraploid) 20.513
CNS0095615Golden flower (tetraploid) 30.099
CRA001975CRR073297Stem 11.213
CRR073298Stem 21.278
CRR073299Stem 31.873
CRR073300Leaf 11.057
CRR073301Leaf 20.672
CRR073302Leaf 31.885
CRR073303Juvenile bud 10.807
CRR073304Juvenile bud 20.626
CRR073305Juvenile bud 30.261
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.029
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.029
CRR073316Gold flowering 20.375
CRR073317Gold flowering 30.083
CRR073318Tawny withering 10.508
CRR073319Tawny withering 20.029
CRR073320Tawny withering 30.585