Gene detail

Detail information of GWHGAAZE002013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	1.28573E-72	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-28	F-box protein CPR30
trEMBL	tr\|M1BWG5\|M1BWG5_SOLTU	5E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054509}
TAIR10	AT4G12560.2	1E-25	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67154018	67155638	+
GWHAAZE00000001	mRNA	67154018	67155638	+
GWHAAZE00000001	exon	67154018	67154907	+
GWHAAZE00000001	exon	67155376	67155638	+
GWHAAZE00000001	CDS	67154018	67154907	+
GWHAAZE00000001	CDS	67155376	67155445	+
GWHAAZE00000001	three_prime_UTR	67155446	67155638	+

Transcript Sequence
>GWHTAAZE002017 ATGTTGGAGTATATTCCTCCGGAAGTTATGACCGAAATTATGACAAGGCTACCAATGAAGACTCTGCTTCAATGCACAAGTGTGTGCAAATCATGGTACTCTCTCATAATTTCCCCTAATTTCATCACAGCACACCTCAATCGCAACAACAATAGCAATCAAATATTTGTTAGGTATTTCACAGCAGATAATAAGTTAACTGGGAAAGATCAGTACTCTGTGCACATAGATAATGAAGCATTTGATAAGCTTGAAACCCTTGAATTTCCATTACCTGGGTATTTTAGGATCATGGGTAGTTGTAATGGATTGATATGCTTGTCTAATCTTCGCTTCATGATACTATGGAACCCGTCCGTTCGAAAATATCTGACTCTTCCAACGCCAAGTGTTACCTATGAATCCCATGGCCCTTTTCAGCAGACTATAGGATTTGGATTCGATTCCGCATCAAATGATTACAAAGTTGTGAGTGTTGTTTATCTCCGACCAGATGGTCTTACGGTTCTGCCTGGGCCGAAGGTAGAGCTTTATGAGCTTAGCACCAGCAGCTGGCGAAATATTAATGCTGGGGACTTTAAGTATATCGTCAGTGAACGTGATACGCAAGCATTTTTGAATGGCGTTGTCCATTGGACCGGTAAGGAAGGAGATGATCTTCCTAATTGGATTGTGTCGTTCGACATGGCAAATGAGGCGTTTGGTGTTATGATGGTGCCTCCTAGTTTACAGCGGGAGTGTGATCTGCGTGTAGCAGTATATGGAGATTCACTTTCTTTGATTCATCTTAAAGTTACTCACCATGATCGTGATTGTTGCATATGGGTGATGAACGAGTACGGCATCGCAGAATCTTGGATAAAACAATTCACGATTGATCTAAACAATGGGGTTGTGGCTAGATTGCACAATGAAATCGAGGAATCCAAATGTCAAGAGAAGGTTGAAGTGCAGATGTAGCAGAGTAAAGCAGTTGTCCTTTCACTAGTTACCTTTTGCTTAGCATATATATATAGAGGATTCGCATAGTTCTCTTATTGTCAAGCTAATACTTCTCAAAATTGTAAAGGAAAGTTTTGTGTGTGTTAAATGGATGCTAAATGTCATGCTTAAGATATTAGGTTATTTTGATGCCATTGTTGCTCGAATTTTC

Network for GWHGAAZE002013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	323	368	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.724
	SRR3591706	second leaf	1.041
	SRR3591707	mature leaf	0.827
	SRR3591708	Shoot apex	1.166
	SRR3591709	Stem	0.835
	SRR3591710	White floral bud	1.109
	SRR3591711	White flower	0.913
	SRR3591712	Green floral bud	0.637
	SRR3591713	Yellow flower	0.738
SRP173429	SRR8316895	Juvenile bud stage	0.632
	SRR8316896	Juvenile bud stage	0.971
	SRR8316897	Juvenile bud stage	0.120
	SRR8316894	Third green stage	0.459
	SRR8316900	Third green stage	1.276
	SRR8316901	Third green stage	0.921
	SRR8316898	Complete white stage	0.581
	SRR8316899	Complete white stage	2.258
	SRR8316903	Complete white stage	1.248
	SRR8316902	Silver flowering stage	0.656
	SRR8316904	Silver flowering stage	0.424
	SRR8316905	Silver flowering stage	0.432
	SRR8316906	Gold flowering stage	0.548
	SRR8316907	Gold flowering stage	0.656
	SRR8316908	Gold flowering stage	0.394
SRP132670	SRR6706286	Control	1.843
	SRR6706287	Light intensity 50%	1.525
	SRR6706288	Light intensity 20%	1.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.144
	CNS0095593	Slightly white alabastrum(diploid) 2	0.918
	CNS0095594	Slightly white alabastrum(diploid) 3	0.939
	CNS0095595	Whole white alabastrum(diploid) 2	1.063
	CNS0095596	Whole white alabastrum(diploid) 3	0.916
	CNS0095597	Whole white alabastrum(diploid) 4	0.694
	CNS0095598	Silvery flower (diploied) 1	1.946
	CNS0095599	Silvery flower (diploied) 2	0.745
	CNS0095600	Silvery flower (diploied) 3	1.244
	CNS0095601	Golden flower (diploid) 1	1.421
	CNS0095602	Golden flower (diploid) 2	1.991
	CNS0095603	Golden flower (diploid) 3	1.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.495
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.305
	CNS0095610	Silvery flower (tetraploid) 1	0.874
	CNS0095611	Silvery flower (tetraploid) 2	0.763
	CNS0095612	Silvery flower (tetraploid) 3	0.865
	CNS0095613	Golden flower (tetraploid) 1	0.541
	CNS0095614	Golden flower (tetraploid) 2	0.573
	CNS0095615	Golden flower (tetraploid) 3	0.394
CRA001975	CRR073297	Stem 1	1.289
	CRR073298	Stem 2	1.482
	CRR073299	Stem 3	1.454
	CRR073300	Leaf 1	0.883
	CRR073301	Leaf 2	1.145
	CRR073302	Leaf 3	1.569
	CRR073303	Juvenile bud 1	0.774
	CRR073304	Juvenile bud 2	0.655
	CRR073305	Juvenile bud 3	1.143
	CRR073306	Third green 1	0.207
	CRR073307	Third green 2	0.148
	CRR073308	Third green 3	0.819
	CRR073309	Second white 1	0.051
	CRR073310	Second white 2	0.454
	CRR073311	Second white 3	0.251
	CRR073312	Silver flowering 1	0.078
	CRR073313	Silver flowering 2	0.023
	CRR073314	Silver flowering 3	0.025
	CRR073315	Gold flowering 1	1.206
	CRR073316	Gold flowering 2	1.636
	CRR073317	Gold flowering 3	1.066
	CRR073318	Tawny withering 1	1.297
	CRR073319	Tawny withering 2	1.185
	CRR073320	Tawny withering 3	0.896