Gene detail

Detail information of GWHGAAZE002007

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266761.1	4.3745E-112	PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B isoform X1 [Vitis vinifera]
COG	YP_002763101.1	2E-43	putative oxidoreductase
Swissprot	tr\|P0DKC6\|HSD1B_ARATH	8E-96	11-beta-hydroxysteroid dehydrogenase 1B
trEMBL	tr\|D7U5Y1\|D7U5Y1_VITVI	4E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38150.3}
TAIR10	AT5G50700.1	5E-75	hydroxysteroid dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67060295	67074428	+
GWHAAZE00000001	mRNA	67060295	67074428	+
GWHAAZE00000001	exon	67060295	67060549	+
GWHAAZE00000001	exon	67060698	67060890	+
GWHAAZE00000001	exon	67067330	67067409	+
GWHAAZE00000001	exon	67067572	67067703	+
GWHAAZE00000001	exon	67067788	67067955	+
GWHAAZE00000001	exon	67068298	67068422	+
GWHAAZE00000001	exon	67074323	67074428	+
GWHAAZE00000001	CDS	67060295	67060549	+
GWHAAZE00000001	CDS	67060698	67060890	+
GWHAAZE00000001	CDS	67067330	67067409	+
GWHAAZE00000001	CDS	67067572	67067703	+
GWHAAZE00000001	CDS	67067788	67067955	+
GWHAAZE00000001	CDS	67068298	67068422	+
GWHAAZE00000001	CDS	67074323	67074428	+

Transcript Sequence
>GWHTAAZE002011 GCCGGATCGACTCTCTGTCTTTCTGTCTGTCATTGGACAAACAAACAAACAAAGATGTACGAGGAGTATATGAACAACAGGTTGAGTAATGTAGCTATTATGTATGTTATGTTCGCAGTCGTGTGTTTAATATTACCGCCTTTCTTTATCTTCAAATTCATATATACCCTCATAAATAGCTTCTTCTGCTCCACCTACAAGGACCTCAAAGGAAAAGTTGTCCTAATCACCGGTGCTTCCTCTGGAATCGGAGAGCATTTGGCATATGAGTATGCAAAGGAAGGAGCATGTTTGGTACTAGTTGCAAGAAGGGAAGGGAAGCTGGGTGAGGTAGCAGAGAAGGCGAGAGGGCTTGGATCTCCTCAAGTACTTGTTGTCTGTGGTGATGTCTCTAACATTACTGACTGTAAGAGGTTTATCGATCAAACCATTGACCACTTTGGCCGATTAGATCATCTGGTTAATAATGCTGGGATTGGCGGCCATACCTCGATTGACATGGATGTTACCAAATTTGCACCTTTCATGGACATAAACTTCTGGGGATCAGTTTACCCGACACACTTTGCAATACCACACCTGCGAAAGAGCAAGGGTAATATTGTTGTTAACTCTTCCTCTGCTGCTCTCTTGCACCCTCCTACATCAGGTTTCTATGGCGCAAGTAAAGCAGCATTGGTAACCTTCTATGAAGCGATGAGAGTAGAATTAGCTCCCCAAGGTGTTAGAATAACAATAGTGACGCTGGGCTTCATTGATTCAGAGATTGTTAGAGGCAAGCAGTTTACAAAGGAAGGTGTCGTTCTAGTCGATACAAAACTTGGAGATGCTATTGCGAATGTATTTCCAGTAATGAGTACGGAGCCATGTGCAAAGGCAGTAGTGGAAGGGACATGCAAAGGGGAAAGATACATAAGTGAACCACAAATTATGAGGGTGCTCTTCCTCCTCAAGCCTGGCTATGGATCGCGTAGCGTTGGATTTTGTGTGGGGTCTAATTCTAGTCATCTCAAGATTAGCACAAACCCATCTGATTCTGCAATCAATGATCGGTATTAG

Network for GWHGAAZE002007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	72	259	5.90E-48
PF08263.13	LRRNT_2	6	31	0.00017
PF13516.7	LRR_6	238	254	0.76
PF13855.7	LRR_8	313	372	1.10E-09
PF00560.34	LRR_1	385	401	1.6
PF13516.7	LRR_6	504	519	1.6
PF00069.26	Pkinase	631	923	1.30E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.059
	SRR3591706	second leaf	0.185
	SRR3591707	mature leaf	0.091
	SRR3591708	Shoot apex	1.129
	SRR3591709	Stem	0.236
	SRR3591710	White floral bud	1.652
	SRR3591711	White flower	0.538
	SRR3591712	Green floral bud	4.610
	SRR3591713	Yellow flower	1.383
SRP173429	SRR8316895	Juvenile bud stage	0.115
	SRR8316896	Juvenile bud stage	0.306
	SRR8316897	Juvenile bud stage	0.784
	SRR8316894	Third green stage	0.017
	SRR8316900	Third green stage	0.273
	SRR8316901	Third green stage	0.073
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.118
	SRR8316903	Complete white stage	0.121
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.092
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.255
	SRR8316907	Gold flowering stage	0.136
	SRR8316908	Gold flowering stage	0.048
SRP132670	SRR6706286	Control	0.042
	SRR6706287	Light intensity 50%	0.003
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.579
	CNS0095593	Slightly white alabastrum(diploid) 2	0.844
	CNS0095594	Slightly white alabastrum(diploid) 3	0.286
	CNS0095595	Whole white alabastrum(diploid) 2	0.250
	CNS0095596	Whole white alabastrum(diploid) 3	0.244
	CNS0095597	Whole white alabastrum(diploid) 4	0.127
	CNS0095598	Silvery flower (diploied) 1	0.051
	CNS0095599	Silvery flower (diploied) 2	0.265
	CNS0095600	Silvery flower (diploied) 3	0.029
	CNS0095601	Golden flower (diploid) 1	0.081
	CNS0095602	Golden flower (diploid) 2	0.042
	CNS0095603	Golden flower (diploid) 3	0.090
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.805
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.440
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.703
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.771
	CNS0095610	Silvery flower (tetraploid) 1	0.442
	CNS0095611	Silvery flower (tetraploid) 2	0.311
	CNS0095612	Silvery flower (tetraploid) 3	0.322
	CNS0095613	Golden flower (tetraploid) 1	0.386
	CNS0095614	Golden flower (tetraploid) 2	0.401
	CNS0095615	Golden flower (tetraploid) 3	0.152
CRA001975	CRR073297	Stem 1	0.314
	CRR073298	Stem 2	0.102
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.071
	CRR073302	Leaf 3	0.012
	CRR073303	Juvenile bud 1	0.112
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.022
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.003
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.004
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000