Detail information of GWHGAAZE001993


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002298418.12.51885E-47hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
Swissprottr|Q8GXC7|FBK50_ARATH2E-25F-box/kelch-repeat protein At3g06240
trEMBLtr|B9GFB6|B9GFB6_POPTR9E-48Uncharacterized protein {ECO:0000313|EMBL:EEE83223.1}
TAIR10AT3G06240.12E-19F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6653006366530848-
GWHAAZE00000001mRNA6653006366530848-
GWHAAZE00000001exon6653006366530848-
GWHAAZE00000001CDS6653006366530848-
Transcript Sequence

Network for GWHGAAZE001993

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH1992446.70E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.361
SRR3591706second leaf2.650
SRR3591707mature leaf3.673
SRR3591708Shoot apex8.830
SRR3591709Stem3.933
SRR3591710White floral bud4.278
SRR3591711White flower5.631
SRR3591712Green floral bud5.655
SRR3591713Yellow flower3.810
SRP173429 SRR8316895Juvenile bud stage 3.116
SRR8316896Juvenile bud stage 4.814
SRR8316897Juvenile bud stage 1.676
SRR8316894Third green stage 2.206
SRR8316900Third green stage 4.594
SRR8316901Third green stage 3.423
SRR8316898Complete white stage 0.844
SRR8316899Complete white stage 6.321
SRR8316903Complete white stage 2.122
SRR8316902Silver flowering stage1.366
SRR8316904Silver flowering stage1.785
SRR8316905Silver flowering stage0.440
SRR8316906Gold flowering stage 1.423
SRR8316907Gold flowering stage 1.020
SRR8316908Gold flowering stage 2.336
SRP132670SRR6706286Control3.811
SRR6706287Light intensity 50%3.107
SRR6706288Light intensity 20%3.383
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.068
CNS0095593Slightly white alabastrum(diploid) 24.640
CNS0095594Slightly white alabastrum(diploid) 34.712
CNS0095595Whole white alabastrum(diploid) 24.162
CNS0095596Whole white alabastrum(diploid) 33.356
CNS0095597Whole white alabastrum(diploid) 44.001
CNS0095598Silvery flower (diploied) 12.251
CNS0095599Silvery flower (diploied) 23.042
CNS0095600Silvery flower (diploied) 33.448
CNS0095601Golden flower (diploid) 12.028
CNS0095602Golden flower (diploid) 22.035
CNS0095603Golden flower (diploid) 32.631
CNS0095604Slightly white alabastrum(tetraploid) 13.636
CNS0095605Slightly white alabastrum(tetraploid) 23.602
CNS0095606Slightly white alabastrum(tetraploid) 34.977
CNS0095607Whole white alabastrum(tetraploid) 12.479
CNS0095608Whole white alabastrum(tetraploid) 21.755
CNS0095609Whole white alabastrum(tetraploid) 33.403
CNS0095610Silvery flower (tetraploid) 12.675
CNS0095611Silvery flower (tetraploid) 22.238
CNS0095612Silvery flower (tetraploid) 31.678
CNS0095613Golden flower (tetraploid) 10.698
CNS0095614Golden flower (tetraploid) 21.754
CNS0095615Golden flower (tetraploid) 30.777
CRA001975CRR073297Stem 15.538
CRR073298Stem 24.939
CRR073299Stem 34.141
CRR073300Leaf 12.601
CRR073301Leaf 23.174
CRR073302Leaf 34.281
CRR073303Juvenile bud 13.471
CRR073304Juvenile bud 21.493
CRR073305Juvenile bud 33.808
CRR073306Third green 10.389
CRR073307Third green 20.076
CRR073308Third green 30.516
CRR073309Second white 10.740
CRR073310Second white 20.009
CRR073311Second white 30.743
CRR073312Silver flowering 10.302
CRR073313Silver flowering 20.240
CRR073314Silver flowering 30.026
CRR073315Gold flowering 14.474
CRR073316Gold flowering 22.874
CRR073317Gold flowering 31.041
CRR073318Tawny withering 12.699
CRR073319Tawny withering 23.703
CRR073320Tawny withering 34.815