Gene detail

Detail information of GWHGAAZE001989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004140705.1	3.51111E-33	PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Swissprot	tr\|O22173\|PABP4_ARATH	4E-27	Polyadenylate-binding protein 4
trEMBL	tr\|A0A0A0L989\|A0A0A0L989_CUCSA	1E-33	Uncharacterized protein {ECO:0000313\|EMBL:KGN57514.1}
TAIR10	AT2G23350.1	2E-25	poly(A) binding protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66467330	66472086	+
GWHAAZE00000001	mRNA	66467330	66472086	+
GWHAAZE00000001	exon	66467330	66467860	+
GWHAAZE00000001	exon	66468741	66468836	+
GWHAAZE00000001	exon	66469708	66469826	+
GWHAAZE00000001	exon	66469941	66470282	+
GWHAAZE00000001	exon	66470367	66470444	+
GWHAAZE00000001	exon	66470529	66470594	+
GWHAAZE00000001	exon	66471203	66471286	+
GWHAAZE00000001	exon	66471988	66472086	+
GWHAAZE00000001	five_prime_UTR	66467330	66467664	+
GWHAAZE00000001	CDS	66467665	66467860	+
GWHAAZE00000001	CDS	66468741	66468836	+
GWHAAZE00000001	CDS	66469708	66469826	+
GWHAAZE00000001	CDS	66469941	66470282	+
GWHAAZE00000001	CDS	66470367	66470444	+
GWHAAZE00000001	CDS	66470529	66470594	+
GWHAAZE00000001	CDS	66471203	66471286	+
GWHAAZE00000001	CDS	66471988	66472086	+

Transcript Sequence
>GWHTAAZE001993 CACACGCTCTTTGCTGTTGTTCTTACTCAGACTCAGACGAAGCTTTAGCATCATCAAGGGTGAAACGAGAGGAGAGAGAATAATGATGCGTAACGGAAACTTGAATTTTCCGTTAGACGGTTATACAACAGAATCTTTCTTCCCGCCAATTTTCAACTATCCTCAGTTGCGTTCTATTCTCACCTCCTCGCTATTCAGTTCCCTCGTCTCTTCTTCTGAATCAGTTCGTCTTCTTCCTCCTCCTCCTCCGCATATTCTCGATGATAAACGCCTCATCCTCATAATAATCGTTAGGGTTTTAGTATTCAAATTTCCCTATCTTGAACTGATTGGAAATGGGGAGGCCGCAACATCGAGTTCTATTGAATCGGGAAATGCTGTATGTCGGAGAGCTACGCCTTATGACGACGGAATGTGATCTCTTCAAGGTTTTCAACTCGGTCGCTCATGTAGTTGGGGTGTATCTTCCTCGCGATGGGTCCAATTTCTCTCGCGGATTTGCTTTTATCAAATTTCAGACGGCTAATGACGTGCTCGATCCAACAAGCTTGTCTCCATATGCACCCAATCCATTTTTGATAAGTCCTGAACCTGCTCCAGAGAAAACATCTCCAAATGGATTTGGCTCGGCAAGGGTGATGCACATGCTTAGCAACCATTTACTCAATGGAAAACCTATACTGGTAAAGTATGCTTTTCTGGACCCTGCAATACCATTCTTTGAAGTTGGAAGAATATTCATAAAGAATTTGGATAAGTTTGTTACCTTAGAAGCCCTAAGAGACATGTTTTCTGCATTTGGGAAGATTTTATCTTGCGCGATACTTAGAGACTTGGGCTACGCTACTGTGCGCTTCGATAATATGGAAGATTCCCTAAGAGCTCTCGAGCAAATGAATAAGTTTTATGAGGGAACAAATATTTACATTGACCCATTTATGAGTGAGGAGGACAATGCATTAGCTGTGGGAGAAAGACAAAAGGAAGAATGGTTGTATTTGTACATTGACAATATAGATGAGAGGAGGATTGGTGATGATCGTCTTCTTCGTCTTTTCTCCCAGTTTGGAGTGATAACTTCATACGAGGTTAGAACAAATTATGGTAGACTTGGGAGAGTGCCACGTCTGGTTGCGTTTTCAACTCCCATGGAGGGTTTTGCAGCGTGCTCGGCTATGCATGGGCAGCTGGTTGGAAACAAACGACTGTACGTCGTACCTGATGGAACTGAGCAACAATTCTCTGAGCCGCGACCAGCTGGGGTGGAGCCTTTTGTTCGTGCTGATCCAGGACAAGCCCCTCGTGAATGCCGTCGACTACAACCTGAACGGGTACATTTGGTTCGTCCTGACCCGGAAGAAGAAGAAGACGACTCTTGTGTAGGTCCTTATTCTCTAGTTCTCTCTTTTCTTTAA

Network for GWHGAAZE001989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	15	65	8.70E-08
PF00076.23	RRM_1	134	190	9.00E-14
PF05553.12	DUF761	177	206	2.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.335
	SRR3591706	second leaf	0.645
	SRR3591707	mature leaf	0.827
	SRR3591708	Shoot apex	0.820
	SRR3591709	Stem	0.286
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.125
	SRR8316896	Juvenile bud stage	1.213
	SRR8316897	Juvenile bud stage	1.151
	SRR8316894	Third green stage	1.230
	SRR8316900	Third green stage	2.171
	SRR8316901	Third green stage	2.477
	SRR8316898	Complete white stage	0.410
	SRR8316899	Complete white stage	3.213
	SRR8316903	Complete white stage	1.137
	SRR8316902	Silver flowering stage	0.314
	SRR8316904	Silver flowering stage	0.159
	SRR8316905	Silver flowering stage	0.092
	SRR8316906	Gold flowering stage	0.495
	SRR8316907	Gold flowering stage	1.074
	SRR8316908	Gold flowering stage	0.299
SRP132670	SRR6706286	Control	0.974
	SRR6706287	Light intensity 50%	1.593
	SRR6706288	Light intensity 20%	1.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.552
	CNS0095593	Slightly white alabastrum(diploid) 2	0.756
	CNS0095594	Slightly white alabastrum(diploid) 3	1.253
	CNS0095595	Whole white alabastrum(diploid) 2	1.020
	CNS0095596	Whole white alabastrum(diploid) 3	0.996
	CNS0095597	Whole white alabastrum(diploid) 4	0.609
	CNS0095598	Silvery flower (diploied) 1	2.015
	CNS0095599	Silvery flower (diploied) 2	0.690
	CNS0095600	Silvery flower (diploied) 3	0.396
	CNS0095601	Golden flower (diploid) 1	1.289
	CNS0095602	Golden flower (diploid) 2	0.382
	CNS0095603	Golden flower (diploid) 3	0.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.843
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.696
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.915
	CNS0095610	Silvery flower (tetraploid) 1	0.444
	CNS0095611	Silvery flower (tetraploid) 2	0.152
	CNS0095612	Silvery flower (tetraploid) 3	0.041
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.188
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	1.504
	CRR073298	Stem 2	0.929
	CRR073299	Stem 3	0.160
	CRR073300	Leaf 1	2.243
	CRR073301	Leaf 2	1.986
	CRR073302	Leaf 3	0.234
	CRR073303	Juvenile bud 1	0.671
	CRR073304	Juvenile bud 2	0.029
	CRR073305	Juvenile bud 3	0.238
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.905
	CRR073316	Gold flowering 2	1.825
	CRR073317	Gold flowering 3	0.026
	CRR073318	Tawny withering 1	0.678
	CRR073319	Tawny withering 2	0.393
	CRR073320	Tawny withering 3	0.391