Gene detail

Detail information of GWHGAAZE001988

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	1.87589E-51	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	4E-19	F-box protein At3g07870
trEMBL	tr\|A0A068V2K9\|A0A068V2K9_COFCA	1E-51	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14709.1}
TAIR10	AT3G07870.1	1E-17	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66448271	66449359	-
GWHAAZE00000001	mRNA	66448271	66449359	-
GWHAAZE00000001	exon	66448919	66449359	-
GWHAAZE00000001	exon	66448271	66448888	-
GWHAAZE00000001	CDS	66448919	66449359	-
GWHAAZE00000001	CDS	66448271	66448888	-

Transcript Sequence
>GWHTAAZE001992 ATGGTTAGGCATTCCACTCCATTGAATCAATATTTGTGTAAAGAGCACTATTATGTACGTTGCGATAATGATACATTTGAGGAGTCTTTTAAATTGGATTTCCCATTCACTAACAGAGCAACTGGCTCTTTTAATATAGTTGGTACTTGTAATGGGTTGGTATGCTTGTCTCAATATGAGACCAGTAACACAGGCATTGTTATCTTATGGAATCCCTCTCTTCGAAAATCATTCATCCTTCCAAATTCGAGGGTAGTATGCAACCGGCGTGATCGTTTGCGCTACTGTATCGGATTTGGAATTGACCCTGTAACCAATGACTATAAGATTGTGAGGCTTGCGTATCTCCGTTCACATGGAGTCATACCACCGCCGAGGGTAGAGGTTTTTGAGCTTAGCACCGGCTCTTGGCGAAATATTAACTTGGGGGACTTTCCTTACGCCTTTTTGAATGGCTATGTCCACTGGGTTGGATATTACCTGAAATATAACTCCAACATGGTTGATGATAGTTTTCATTCTTTGATTGTTTCATTCGACATGAGGAAAGAGACTCTAGGTGTTGTAATGGCACCACCTTGTGTACAGAAGTATTTGGACTGGAGCATGTGTGTCACAGTATTTGGAGAATCGCTTTCTTTTTTACATCGTTATGTAGATCACTGTTGGTGGCTATGGGTGATGAAGGAATATTGCGTTGTAACCTCTTGGACAAAGAAATTTGTTATTGATCTAGGAGGGCATGTGGGGAGGCCAATTTGTTTTAGGGAGAATGGTGATATCTTGTTGGAGAGAAGAATGAGTACTTTTTCTTCAGAAGCGCAGTTGGTTTCCTATGATCCTAAAAGTAAAATGATCAAGAATCTCGAAATACATGGAATGACAGGCTCGTTTTATGCAGATACTTACAGAGAGAGCCTTGTCTTAAGTAAGGGCCTAAATGAAGTCTTACAGAGGCACAAAAATTCTGGTGGTGCAGTAACTTGCCTGGGGAAATCCGTTCTATCTAGAGAAGGCAATGATGTTAACATGAAGAGAAAAAAAAAGAAACAAAAATGA

Network for GWHGAAZE001988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	149	258	6.80E-07
PF00847.21	AP2	25	52	9.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.779
	SRR3591706	second leaf	0.158
	SRR3591707	mature leaf	0.119
	SRR3591708	Shoot apex	1.664
	SRR3591709	Stem	0.658
	SRR3591710	White floral bud	1.004
	SRR3591711	White flower	1.365
	SRR3591712	Green floral bud	1.350
	SRR3591713	Yellow flower	0.923
SRP173429	SRR8316895	Juvenile bud stage	0.793
	SRR8316896	Juvenile bud stage	1.276
	SRR8316897	Juvenile bud stage	0.358
	SRR8316894	Third green stage	0.699
	SRR8316900	Third green stage	1.729
	SRR8316901	Third green stage	1.134
	SRR8316898	Complete white stage	0.429
	SRR8316899	Complete white stage	0.834
	SRR8316903	Complete white stage	0.440
	SRR8316902	Silver flowering stage	0.498
	SRR8316904	Silver flowering stage	0.394
	SRR8316905	Silver flowering stage	0.380
	SRR8316906	Gold flowering stage	0.320
	SRR8316907	Gold flowering stage	0.261
	SRR8316908	Gold flowering stage	0.343
SRP132670	SRR6706286	Control	0.760
	SRR6706287	Light intensity 50%	0.913
	SRR6706288	Light intensity 20%	0.733
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.473
	CNS0095593	Slightly white alabastrum(diploid) 2	1.396
	CNS0095594	Slightly white alabastrum(diploid) 3	2.560
	CNS0095595	Whole white alabastrum(diploid) 2	1.753
	CNS0095596	Whole white alabastrum(diploid) 3	2.342
	CNS0095597	Whole white alabastrum(diploid) 4	1.101
	CNS0095598	Silvery flower (diploied) 1	0.745
	CNS0095599	Silvery flower (diploied) 2	0.391
	CNS0095600	Silvery flower (diploied) 3	0.789
	CNS0095601	Golden flower (diploid) 1	0.391
	CNS0095602	Golden flower (diploid) 2	0.908
	CNS0095603	Golden flower (diploid) 3	0.975
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.946
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.446
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.978
	CNS0095610	Silvery flower (tetraploid) 1	0.337
	CNS0095611	Silvery flower (tetraploid) 2	0.317
	CNS0095612	Silvery flower (tetraploid) 3	0.169
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	0.726
	CRR073298	Stem 2	0.607
	CRR073299	Stem 3	0.674
	CRR073300	Leaf 1	0.792
	CRR073301	Leaf 2	0.223
	CRR073302	Leaf 3	0.616
	CRR073303	Juvenile bud 1	1.528
	CRR073304	Juvenile bud 2	0.203
	CRR073305	Juvenile bud 3	0.388
	CRR073306	Third green 1	0.076
	CRR073307	Third green 2	0.057
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.252
	CRR073312	Silver flowering 1	0.090
	CRR073313	Silver flowering 2	0.184
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.571
	CRR073316	Gold flowering 2	0.157
	CRR073317	Gold flowering 3	0.716
	CRR073318	Tawny withering 1	1.115
	CRR073319	Tawny withering 2	0.853
	CRR073320	Tawny withering 3	0.815