Gene detail

Detail information of GWHGAAZE001978

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	2.5081E-99	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	8E-21	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	4E-79	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	2E-18	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66300249	66301374	-
GWHAAZE00000001	mRNA	66300249	66301374	-
GWHAAZE00000001	exon	66300397	66301374	-
GWHAAZE00000001	exon	66300249	66300320	-
GWHAAZE00000001	CDS	66300397	66301374	-
GWHAAZE00000001	CDS	66300249	66300320	-

Transcript Sequence
>GWHTAAZE001982 ATGTCGGATTACCTACCTTCCACAGTTCTTACGAACATTCTCTCCAGACTACAGGTAAAAACCCTAGGTCGATTCAGGTGCGTATGCAAATCATGGTGTTCCATCATTTCAAGCCCTAATTTCATCAACAAACACCTCACTCACAATATCAGTAACACTCACCTCCTCTTGAGGTATCTTTCATTATGCCCTAAAAAAGAACACTACTCACTTCGTTCGGATTATTCATTTCTCGAATTAGCCCGAATCAAATGCCCTTTTAAGACCGCCTCCGGTAATTTCTTCCGTATAATCGGCTGTTGCAATGGTTTAATCTGTCTGTCAGATGATTATTTTGGATATAGGTATAATACAATCATTTGGAACCCTGCGATTCGTATCTATGTATCTCTTCCTACGCCTAGGGTTTGTTATGATTCTTACGGGCCTTATACATATGCTTTAGGGTTTGGATTTAACCCTAATACTGTGGATTACAAGGTTGTTAGGATAGCGTATGTTTATGTTGATGATGAATCTGGTTCTGGTTATGGCCGTTACGCGGTCCCCCCTGAGGTTGAGGTGTATGAGGTTAGCACAGGTGTTTGGAGAAATGTGAGTGCTAATGGTGTTATGTATAAAGTTGTTGAGTTTATTTGGTCGAGCGCATTTGTGAATGGGGCTGTTCATTGGGTTGTGTATGACAGGAATGAGGAGGGTGGGGGTGAAGAGGGGCAGTTTTCAAATAGAATATTGGTGTTTGATATGGGGAGTGATGTGTTTAGCTACTTAGAGTTACCAAATCAGCTAACTAATGTTTACCCGTTGGACTTGTCTATTACGGCTTTTGGGGATACCGTTGTTGTGTATTGGTGTCAAGCTCGAGTTTTGGGTCGGTTGTGTGGTCGATGTGCTGTGTGGGTGATGCAAGAGTATGGTAATGTGGGATCTTGGAGTGAGAGTTTTTTGGTTGATTTGGAGGGAGGGATATCGAATGTGATAGGATTAGGAGTGCTGGGATTCATGGTGGGAAAGACTCTTTTTTCGGGGGTAATTATGTTAAGAGCCTAG

Network for GWHGAAZE001978

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	44	2.60E-09
PF07734.14	FBA_1	217	320	0.00018
PF00642.25	zf-CCCH	262	286	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K18753	ZFP36L	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.457
	SRR3591706	second leaf	2.299
	SRR3591707	mature leaf	2.479
	SRR3591708	Shoot apex	4.149
	SRR3591709	Stem	1.752
	SRR3591710	White floral bud	7.453
	SRR3591711	White flower	4.570
	SRR3591712	Green floral bud	10.015
	SRR3591713	Yellow flower	2.342
SRP173429	SRR8316895	Juvenile bud stage	9.297
	SRR8316896	Juvenile bud stage	10.308
	SRR8316897	Juvenile bud stage	5.049
	SRR8316894	Third green stage	4.195
	SRR8316900	Third green stage	8.014
	SRR8316901	Third green stage	7.128
	SRR8316898	Complete white stage	1.600
	SRR8316899	Complete white stage	13.329
	SRR8316903	Complete white stage	3.039
	SRR8316902	Silver flowering stage	0.477
	SRR8316904	Silver flowering stage	1.862
	SRR8316905	Silver flowering stage	0.758
	SRR8316906	Gold flowering stage	2.081
	SRR8316907	Gold flowering stage	0.962
	SRR8316908	Gold flowering stage	1.588
SRP132670	SRR6706286	Control	21.664
	SRR6706287	Light intensity 50%	21.361
	SRR6706288	Light intensity 20%	21.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.134
	CNS0095593	Slightly white alabastrum(diploid) 2	8.437
	CNS0095594	Slightly white alabastrum(diploid) 3	6.601
	CNS0095595	Whole white alabastrum(diploid) 2	6.433
	CNS0095596	Whole white alabastrum(diploid) 3	5.311
	CNS0095597	Whole white alabastrum(diploid) 4	6.146
	CNS0095598	Silvery flower (diploied) 1	9.927
	CNS0095599	Silvery flower (diploied) 2	7.539
	CNS0095600	Silvery flower (diploied) 3	4.585
	CNS0095601	Golden flower (diploid) 1	6.969
	CNS0095602	Golden flower (diploid) 2	7.273
	CNS0095603	Golden flower (diploid) 3	8.902
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.835
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.534
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.460
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.806
	CNS0095610	Silvery flower (tetraploid) 1	6.878
	CNS0095611	Silvery flower (tetraploid) 2	6.693
	CNS0095612	Silvery flower (tetraploid) 3	3.903
	CNS0095613	Golden flower (tetraploid) 1	1.573
	CNS0095614	Golden flower (tetraploid) 2	5.066
	CNS0095615	Golden flower (tetraploid) 3	1.574
CRA001975	CRR073297	Stem 1	12.116
	CRR073298	Stem 2	10.956
	CRR073299	Stem 3	13.460
	CRR073300	Leaf 1	6.228
	CRR073301	Leaf 2	5.407
	CRR073302	Leaf 3	4.008
	CRR073303	Juvenile bud 1	6.321
	CRR073304	Juvenile bud 2	2.023
	CRR073305	Juvenile bud 3	4.849
	CRR073306	Third green 1	0.112
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.195
	CRR073309	Second white 1	0.176
	CRR073310	Second white 2	0.494
	CRR073311	Second white 3	0.097
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.425
	CRR073314	Silver flowering 3	0.409
	CRR073315	Gold flowering 1	1.154
	CRR073316	Gold flowering 2	0.562
	CRR073317	Gold flowering 3	0.537
	CRR073318	Tawny withering 1	1.760
	CRR073319	Tawny withering 2	0.470
	CRR073320	Tawny withering 3	2.120