Detail information of GWHGAAZE001976


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007032645.12.09186E-49S locus F-box protein with the low allelic sequence polymorphism 1-S2 [Theobroma cacao]
Swissprottr|Q9SFC7|FB135_ARATH1E-27F-box protein At3g07870
trEMBLtr|A0A061EF68|A0A061EF68_THECC8E-50S locus F-box protein with the low allelic sequence polymorphism 1-S2 {ECO:0000313|EMBL:EOY03571.1}
TAIR10AT3G07870.13E-18F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6628058666281803+
GWHAAZE00000001mRNA6628058666281803+
GWHAAZE00000001exon6628058666281803+
GWHAAZE00000001CDS6628058666281803+
Transcript Sequence

Network for GWHGAAZE001976

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box22633.10E-09
PF07734.14FBA_12253743.10E-09
PF02560.15Cyanate_lyase1191774.10E-25
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
K01725cynS Metabolic pathways map01100
Nitrogen metabolismmap00910

Gene Ontology

GO term OntologyName
GO:0009439biological_processcyanate metabolic process
GO:0005515molecular_functionprotein binding
GO:0008824molecular_functioncyanate hydratase activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.246
SRR3591706second leaf3.315
SRR3591707mature leaf6.012
SRR3591708Shoot apex6.310
SRR3591709Stem5.483
SRR3591710White floral bud4.160
SRR3591711White flower3.400
SRR3591712Green floral bud5.154
SRR3591713Yellow flower3.209
SRP173429 SRR8316895Juvenile bud stage 2.617
SRR8316896Juvenile bud stage 3.190
SRR8316897Juvenile bud stage 0.959
SRR8316894Third green stage 1.427
SRR8316900Third green stage 2.951
SRR8316901Third green stage 4.206
SRR8316898Complete white stage 1.097
SRR8316899Complete white stage 4.983
SRR8316903Complete white stage 1.710
SRR8316902Silver flowering stage1.147
SRR8316904Silver flowering stage1.219
SRR8316905Silver flowering stage0.798
SRR8316906Gold flowering stage 1.857
SRR8316907Gold flowering stage 2.057
SRR8316908Gold flowering stage 2.564
SRP132670SRR6706286Control5.601
SRR6706287Light intensity 50%4.569
SRR6706288Light intensity 20%5.128
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.506
CNS0095593Slightly white alabastrum(diploid) 23.287
CNS0095594Slightly white alabastrum(diploid) 32.074
CNS0095595Whole white alabastrum(diploid) 21.755
CNS0095596Whole white alabastrum(diploid) 32.229
CNS0095597Whole white alabastrum(diploid) 40.988
CNS0095598Silvery flower (diploied) 11.882
CNS0095599Silvery flower (diploied) 22.017
CNS0095600Silvery flower (diploied) 33.464
CNS0095601Golden flower (diploid) 13.263
CNS0095602Golden flower (diploid) 23.592
CNS0095603Golden flower (diploid) 34.547
CNS0095604Slightly white alabastrum(tetraploid) 14.462
CNS0095605Slightly white alabastrum(tetraploid) 25.506
CNS0095606Slightly white alabastrum(tetraploid) 37.770
CNS0095607Whole white alabastrum(tetraploid) 13.207
CNS0095608Whole white alabastrum(tetraploid) 21.828
CNS0095609Whole white alabastrum(tetraploid) 33.616
CNS0095610Silvery flower (tetraploid) 12.982
CNS0095611Silvery flower (tetraploid) 24.236
CNS0095612Silvery flower (tetraploid) 32.710
CNS0095613Golden flower (tetraploid) 13.784
CNS0095614Golden flower (tetraploid) 23.585
CNS0095615Golden flower (tetraploid) 33.222
CRA001975CRR073297Stem 15.953
CRR073298Stem 24.365
CRR073299Stem 34.594
CRR073300Leaf 12.951
CRR073301Leaf 24.120
CRR073302Leaf 33.581
CRR073303Juvenile bud 14.638
CRR073304Juvenile bud 21.726
CRR073305Juvenile bud 33.526
CRR073306Third green 11.243
CRR073307Third green 20.226
CRR073308Third green 31.383
CRR073309Second white 11.116
CRR073310Second white 21.518
CRR073311Second white 31.044
CRR073312Silver flowering 10.560
CRR073313Silver flowering 21.811
CRR073314Silver flowering 30.539
CRR073315Gold flowering 12.281
CRR073316Gold flowering 23.061
CRR073317Gold flowering 33.263
CRR073318Tawny withering 13.353
CRR073319Tawny withering 22.215
CRR073320Tawny withering 32.568