Gene detail

Detail information of GWHGAAZE001971

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	2.47753E-71	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-34	F-box protein CPR30
trEMBL	tr\|M1BWG5\|M1BWG5_SOLTU	2E-71	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054509}
TAIR10	AT4G12560.2	3E-32	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66190498	66196193	-
GWHAAZE00000001	mRNA	66190498	66196193	-
GWHAAZE00000001	exon	66195155	66196193	-
GWHAAZE00000001	exon	66193562	66193675	-
GWHAAZE00000001	exon	66190498	66191627	-
GWHAAZE00000001	CDS	66195155	66196193	-
GWHAAZE00000001	CDS	66193562	66193675	-
GWHAAZE00000001	CDS	66190498	66191627	-

Transcript Sequence
>GWHTAAZE001975 ATGTCAGATTATGTGCTTCCTACTGAGATTTGGATCGAAGGAATCCTCACAAGGTTACCCGTCAAAACTCTGTTAAGATGCAGAAGTGTCTGCAAATCATGGTACTCTTTCATCACTTCCCCTAATTTCATCACTTTACATCTCAATCGAACTACTTCCAACAACGACAATAGATTACTGATTAGGAGCTACAATAATAGAACTGAGAATTATTCTGTATACACTGATAATGAACCCTTTGATAATTGTGAGAACCTCGACTTTCCACTCCATTCTAGTACCAATCGTTTTAACATTATTGGTACTTGTAATGGATTGGTCTGTTTATCCGATGATGCTATACATTATACAGACATAATGATCTTATGGAACCCATCTATTCGAAAATTTGTGCATCTTCCCTATCCCAATTTTGGATATAATACACATGGCGCTTATCTGCAATCTGTTGGATTTGGGTTCAACCCTGTGACCAATGACTACAATGTCGTGATAGTAGCGTATCTCAATTTAAAAATCGAGACGGAGGTGGTGGAGCTCTATGAGCTCAGCACCGGCTCTTGGCGAATCGTTAGCACTAACGTTGACATTTCTTATATGATCCAGTCCTGGTCTACCCAAGCTGTGTTGAATGGTGTGGTCCATTGGGTTGGACTCGCTCGAAAGGACGTTCATGATTTGATTGTGTCGTTTGACTTCAAAAGTGAGACTTTTGGTGTTATGAGGGTGCCGCATAGGGCAGAAACGGAAGTTAAACTGCGGCTGTGCGTTACGGTATTTGGAGAATCACTTTCTTTGATAGATGAAAGAATGTGCATGAATAAGACTTATTGTAACATATGGGTGATGAAAGAGTATGGCGTGGAAAATACTTGGACAAGGCAGCTGAAGATTGATACAACATTTGATTGTTTGAGAGTATTATATGGCTTTCGAAACAATGGTGATGTCTTACTAGCGGAAAACAGTGATTCTGGAGATTTGTTTTCTTATAATCCCAAAAGTAGAAAAGTCAAGAAACTAGGCATGTGCGGATGTGATCTTGTTATGATTTCTCACTTTTTGATGCCAATGTTTCTCTTTGAAATTTTGTCTTTGTTTTCTGCTACATTATTGCGAGTTTTTATTGACAAGAGCAGTGTGGATGTGCCAGATTATGTGCTTCCTACTGAGATTTGGATCGAAGAAATCCTCGCAAGGTTACCGGTCAAAACTCTGTTAAGATGCACAAGTGTATGCAAATCATGGTACTCTCTCATCACTTCCCCCAATTTCATAACTTTACATCTCAATCGAACTGCTTCCAACAACGATAATCGCTTACTGATTAGGAGCTGCAATAATAGAATTGAGAATTATTCTGTATACACTGATAATGAAACTTTTGATGAGTGTGAGAAGCTTCACTTTCCACTCCATTCTAGAATCAATCGTTTTAACATTGTTGGTACTTGTAATGGATTGGTCTGTTTATCTGAGGATGTTCAGCAATATACTGATATAATGATCCTATGGAACCCATCTATTCGAAAGTTTGTGCATCTTCCCTATCCCAATTTTGGATATAATACACATGGTGCTTATCTGCAATCCGTTGGGTTTGGGTTCAACTCTGTGACCAATGACTACAATGTTGTGAGAATTGCGTATCTCAAGAAAGTCGAGACAGAGGTGGTGGAGCTCTATGAGCTCAGCACTGGCTCTTGGCGAAACGTTTGTGCGAGTGTTGACATTTCTTATGTGATCAAGCCCCGGTCTACCCAAGTTGTGTTGAATGGTGTGGTCCATTGGTCTGGACTCGCTCGAAAGGACGGTCATGCTGTGATTGTGTCGTTTGACTTCAAAAGCGAGACTTTTGGTGTTATGCGGGTGCCGCGTAGGGCAGAAGCGGAACTTAATATGCGGCTGTGCGTTACGGTATTTGGAGAATCACTTTCTTTGATAGATGAAAGAATATGCATGAATGAGACTTATTGTAACATATGGGTGATGAAAGAGTATGGCATGGAAAATACTTGGACAAGGCAGCTCAAGATTGATACAACACCTGTGCCACATCTGAGGCGATCATTTGATTGTTTGAGGGTATTATATGGCTTTAGAAACAATGGTGATGTCTTACTAGCAGAAAACAGTGATTCTGGAGATTTGGTTTCTTACGATCCCAAAAGTAGAAACTTCAAGAAACTTGGCATACGTGGATGTGGTATGTCGTTTTATATCAGCACTTACATGGAGAGCCTAGTCCTAATTAATGGAAAAAGTGATGCCTTGGAGGTGTAA

Network for GWHGAAZE001971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	15	43	1.80E-07
PF07734.14	FBA_1	209	302	2.60E-10
PF00646.34	F-box	394	425	8.20E-08
PF07734.14	FBA_1	589	697	8.50E-12
PF00069.26	Pkinase	364	616	4.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.655
	SRR3591706	second leaf	2.327
	SRR3591707	mature leaf	2.234
	SRR3591708	Shoot apex	3.729
	SRR3591709	Stem	3.406
	SRR3591710	White floral bud	3.555
	SRR3591711	White flower	2.503
	SRR3591712	Green floral bud	4.430
	SRR3591713	Yellow flower	1.944
SRP173429	SRR8316895	Juvenile bud stage	3.047
	SRR8316896	Juvenile bud stage	5.052
	SRR8316897	Juvenile bud stage	1.986
	SRR8316894	Third green stage	1.938
	SRR8316900	Third green stage	6.109
	SRR8316901	Third green stage	4.491
	SRR8316898	Complete white stage	2.204
	SRR8316899	Complete white stage	7.309
	SRR8316903	Complete white stage	3.095
	SRR8316902	Silver flowering stage	1.923
	SRR8316904	Silver flowering stage	2.937
	SRR8316905	Silver flowering stage	0.754
	SRR8316906	Gold flowering stage	2.606
	SRR8316907	Gold flowering stage	3.150
	SRR8316908	Gold flowering stage	2.553
SRP132670	SRR6706286	Control	3.240
	SRR6706287	Light intensity 50%	3.247
	SRR6706288	Light intensity 20%	3.970
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.957
	CNS0095593	Slightly white alabastrum(diploid) 2	4.614
	CNS0095594	Slightly white alabastrum(diploid) 3	4.691
	CNS0095595	Whole white alabastrum(diploid) 2	2.813
	CNS0095596	Whole white alabastrum(diploid) 3	4.219
	CNS0095597	Whole white alabastrum(diploid) 4	5.238
	CNS0095598	Silvery flower (diploied) 1	6.022
	CNS0095599	Silvery flower (diploied) 2	3.416
	CNS0095600	Silvery flower (diploied) 3	6.346
	CNS0095601	Golden flower (diploid) 1	3.915
	CNS0095602	Golden flower (diploid) 2	6.043
	CNS0095603	Golden flower (diploid) 3	5.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.330
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.393
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.715
	CNS0095610	Silvery flower (tetraploid) 1	6.149
	CNS0095611	Silvery flower (tetraploid) 2	6.124
	CNS0095612	Silvery flower (tetraploid) 3	4.329
	CNS0095613	Golden flower (tetraploid) 1	2.903
	CNS0095614	Golden flower (tetraploid) 2	4.778
	CNS0095615	Golden flower (tetraploid) 3	3.486
CRA001975	CRR073297	Stem 1	4.203
	CRR073298	Stem 2	4.683
	CRR073299	Stem 3	4.701
	CRR073300	Leaf 1	4.745
	CRR073301	Leaf 2	5.322
	CRR073302	Leaf 3	3.489
	CRR073303	Juvenile bud 1	5.800
	CRR073304	Juvenile bud 2	4.435
	CRR073305	Juvenile bud 3	4.473
	CRR073306	Third green 1	1.007
	CRR073307	Third green 2	0.972
	CRR073308	Third green 3	2.032
	CRR073309	Second white 1	0.804
	CRR073310	Second white 2	1.418
	CRR073311	Second white 3	1.101
	CRR073312	Silver flowering 1	1.221
	CRR073313	Silver flowering 2	0.661
	CRR073314	Silver flowering 3	0.914
	CRR073315	Gold flowering 1	3.647
	CRR073316	Gold flowering 2	3.531
	CRR073317	Gold flowering 3	1.657
	CRR073318	Tawny withering 1	4.023
	CRR073319	Tawny withering 2	2.607
	CRR073320	Tawny withering 3	4.578