Gene detail

Detail information of GWHGAAZE001909

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	H2DH21.1C7A29_PANGI	0	RecName: Full=Cytochrome P450 CYP72A219; AltName: Full=Cytochrome P450 CYP72A129 [Panax ginseng]
COG	YP_004448498.1	1E-54	monooxygenase
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A022QUQ9\|A0A022QUQ9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU31636.1}
TAIR10	AT3G14690.1	0	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	64425500	64432391	+
GWHAAZE00000001	mRNA	64425500	64432391	+
GWHAAZE00000001	exon	64425500	64425776	+
GWHAAZE00000001	exon	64429638	64429858	+
GWHAAZE00000001	exon	64430527	64430774	+
GWHAAZE00000001	exon	64430892	64431276	+
GWHAAZE00000001	exon	64431966	64432391	+
GWHAAZE00000001	five_prime_UTR	64425500	64425502	+
GWHAAZE00000001	CDS	64425503	64425776	+
GWHAAZE00000001	CDS	64429638	64429858	+
GWHAAZE00000001	CDS	64430527	64430774	+
GWHAAZE00000001	CDS	64430892	64431276	+
GWHAAZE00000001	CDS	64431966	64432391	+

Transcript Sequence
>GWHTAAZE001913 AATATGGAGACAATTTTGTATATTATTGGAGTTTGTAGTACAATTTATGTGGGAATATTGGCATGGAGAGTGTTGAATTGGGTGTGGTTAAGGCCAAGGAAGGTGGAGAAGTACTTGAGAGAACAAGGTCTAAAGGGAACTTCATACAGGCTACTTTTTGGAGACTTGAAAGAGATGTCCCTCATGCGGAAAGAAGCAAAAACCAAGCCCATCAATCTCTCCGACGACGTCGCTCCTCGTGTCATGCCCTTCATCCACAAATCCTTTACCAACTATGGTAAGAATTTCTTTACATGGCTTGGACCAAAAGCAAATGTGCATATAATGGACCCTGATCTTATAAAGGACATATTTACTAGGAATAATATTTTTCAAAAGCCCAGGGGAGGAAATCCACTGGGCAGGTTACTGGCAACTGGGCTTGTTGATTATGATGGTGACAAATGGGCTAAACACAGAAAAATAATCAATCCAGCTTTCCATCTTGAGAAGCTCAAGTGTATGCTGCCAGCCTTCAAGTTGAGTTGTAGTGAGATGATTGGAAAATGGGAGGAAAGAGTACTCGAAAAAGGGTCGTCGTGTGAGTTGGATGTGTATCCTTACCTTCAAACATTGACTAGCGATGTGATTTCACGGACAGCATTTGGCAGTAGCTATGAAGAGGGAAGAAGAATATTTGAACTTCAAACAGAACAAGCCAAGCTAGTAATTCAAACAATCCAGACAGTTTATATTCCTGGATCTAGGTTTTTGCCCACAAAGAGATTCAACAGGATGAAGGAGATTGAGAAACAAGTTCAAGCTTCAATAAGGGGAATCATTAATAAAAGAGTTAAATCAATAGAAGCTGGAGAAGCAAGTCAAGATGACTTATTGGGTATACTATTGGAATCCAATTTCAGAGAGATTCAAGAACATGGAAATAAAAGCTATGGAATGAATATTCATGACGTTGTTGAAGAGTGTAAACTATTCTACTTCGCTGGGCAAGAGACTACGTCTGGGTTGCTTGTGTGGACGATGATTCTACTGAGTCAATACCCATCCTGGCAAACTCGTGCCAGGGAAGAGGTTTTTCAGGTCTTTGGGGATACCAAACCAGATTTTGATGGCTTGAATCGCCTGAAAATTGTAAACATGATTTTTAACGAGGTTCTAAGGTTATACCCGCCTGGAGCTACAATAGGTCGAACTATTCACGAGGAAACTAAAATAGGAGAAATATCCATACCAGCTGGATCAATTCTCTCATTACCAATACTCCTAATTCATTATGACCGCGAACTATGGGGCGATGATGCTAATGAGTTCAAACCAGATAGATTTGCTGAAGGAGTATCAAAAGTAACGAAGGGCCAAGTTTCATATTTCCCGTTTGGCTGGGGACCACGGATTTGCATTGGGCAAAATTTTGCAATGTTAGAAGCTAAAATGGCAATGGCTATGATACTACAACGGTTCTCCTTCGTGCTTTCGCCATCCTATGCACATGCTCCCCACACAATCATAACTCTTCAACCACAATATGGTGCTTATTTAATTCTACAAAAGTTGTAG

Network for GWHGAAZE001909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	84	492	1.60E-83
PF00646.34	F-box	18	53	4.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.116
	SRR3591706	second leaf	2.732
	SRR3591707	mature leaf	3.892
	SRR3591708	Shoot apex	0.793
	SRR3591709	Stem	2.218
	SRR3591710	White floral bud	5.256
	SRR3591711	White flower	17.025
	SRR3591712	Green floral bud	2.544
	SRR3591713	Yellow flower	13.337
SRP173429	SRR8316895	Juvenile bud stage	13.897
	SRR8316896	Juvenile bud stage	24.312
	SRR8316897	Juvenile bud stage	7.260
	SRR8316894	Third green stage	9.196
	SRR8316900	Third green stage	25.440
	SRR8316901	Third green stage	26.882
	SRR8316898	Complete white stage	23.586
	SRR8316899	Complete white stage	44.075
	SRR8316903	Complete white stage	39.409
	SRR8316902	Silver flowering stage	224.486
	SRR8316904	Silver flowering stage	275.990
	SRR8316905	Silver flowering stage	151.879
	SRR8316906	Gold flowering stage	559.284
	SRR8316907	Gold flowering stage	466.447
	SRR8316908	Gold flowering stage	434.063
SRP132670	SRR6706286	Control	24.720
	SRR6706287	Light intensity 50%	25.337
	SRR6706288	Light intensity 20%	25.558
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.351
	CNS0095593	Slightly white alabastrum(diploid) 2	23.501
	CNS0095594	Slightly white alabastrum(diploid) 3	26.015
	CNS0095595	Whole white alabastrum(diploid) 2	18.973
	CNS0095596	Whole white alabastrum(diploid) 3	10.703
	CNS0095597	Whole white alabastrum(diploid) 4	18.125
	CNS0095598	Silvery flower (diploied) 1	71.006
	CNS0095599	Silvery flower (diploied) 2	63.158
	CNS0095600	Silvery flower (diploied) 3	150.403
	CNS0095601	Golden flower (diploid) 1	57.398
	CNS0095602	Golden flower (diploid) 2	153.077
	CNS0095603	Golden flower (diploid) 3	158.394
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.037
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.118
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.092
	CNS0095610	Silvery flower (tetraploid) 1	104.648
	CNS0095611	Silvery flower (tetraploid) 2	128.131
	CNS0095612	Silvery flower (tetraploid) 3	50.282
	CNS0095613	Golden flower (tetraploid) 1	62.943
	CNS0095614	Golden flower (tetraploid) 2	95.854
	CNS0095615	Golden flower (tetraploid) 3	46.449
CRA001975	CRR073297	Stem 1	20.781
	CRR073298	Stem 2	20.610
	CRR073299	Stem 3	16.593
	CRR073300	Leaf 1	16.438
	CRR073301	Leaf 2	15.275
	CRR073302	Leaf 3	10.691
	CRR073303	Juvenile bud 1	9.451
	CRR073304	Juvenile bud 2	13.457
	CRR073305	Juvenile bud 3	7.974
	CRR073306	Third green 1	71.048
	CRR073307	Third green 2	53.489
	CRR073308	Third green 3	48.497
	CRR073309	Second white 1	68.484
	CRR073310	Second white 2	132.461
	CRR073311	Second white 3	90.989
	CRR073312	Silver flowering 1	42.865
	CRR073313	Silver flowering 2	26.797
	CRR073314	Silver flowering 3	28.399
	CRR073315	Gold flowering 1	98.050
	CRR073316	Gold flowering 2	144.895
	CRR073317	Gold flowering 3	64.536
	CRR073318	Tawny withering 1	41.120
	CRR073319	Tawny withering 2	28.416
	CRR073320	Tawny withering 3	23.713